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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41662

Status of greater sage-grouse in the Bi-State Distinct Population Segment—An evaluation of population trends, habitat selection, and efficacy of conservation actions

PrefaceThis study was completed to provide timely scientific information regarding greater sage-grouse population trends, habitat selection, and the efficacy of previous conservation actions implemented to benefit the Bi-State Distinct Population Segment (DPS). Specifically, we provide these analyses to inform the current (2024) status review and pending listing decision for the DPS being undertak
Authors
Peter S. Coates, Megan C. Milligan, Brian G. Prochazka, Brianne E. Brussee, Shawn T. O'Neil, Carl G. Lundblad, Sarah C. Webster, Cali L. Weise, Steven R. Mathews, Michael P. Chenaille, Cameron L. Aldridge, Michael S. O'Donnell, Shawn P. Espinosa, Amy C. Sturgill, Kevin E. Doherty, John C. Tull, Katherine Miller, Lief A. Wiechman, Steve Abele, John Boone, Heather Stone, Michael L. Casazza

Climate-influenced phenology of larval fish transport in a large lake

Elucidating physical transport phenologies in large lakes can aid understanding of larval recruitment dynamics. Here, we integrate a series of climate, hydrodynamic, biogeochemical, and Lagrangian particle dispersion models to: (1) simulate hatch and transport of fish larvae throughout an illustrative large lake, (2) evaluate patterns of historic and potential future climate-induced larval transpo
Authors
Spencer T. Gardner, Mark D. Rowe, Pengfei Xue, Xing Zhou, Peter Alsip, David Bunnell, Paris D. Collingsworth, Edward S. Rutherford, Tomas O. Hook

Projected sea-level rise and high tide flooding at Timucuan Ecological and Historic Preserve, Florida

IntroductionNational parks and preserves in the South Atlantic-Gulf Region contain valuable coastal habitats such as tidal wetlands and mangrove forests, as well as irreplaceable historic buildings and archeological sites located in low-lying areas. These natural and cultural resources are vulnerable to accelerated sea-level rise and escalating high tide flooding events. Through a Natural Resource
Authors
Hana R. Thurman, Nicholas M. Enwright, Michael J. Osland, Davina L. Passeri, Richard H. Day, Bethanie M. Simons

Applying local and global sensitivity analysis to inform bigheaded carp management

Natural resource managers commonly use population-level models to aid in understanding the status of target populations or the potential implications of management actions. Sensitivity analyses, specifically, local sensitivity analysis (LSA) and global sensitivity analysis (GSA), exist as tools to improve understanding of these models, the importance of specific parameters to model outcomes, and t
Authors
Richard A. Erickson, Benjamin J. Marcek, Hannah Mann Thompson, Brian Schoenung, John M. Dettmers, Michael N. Fienen

Realizing the potential of eDNA biodiversity monitoring tools in the marine environment with application to offshore renewable energy

The U.S. Geological Survey (USGS) researches the biological diversity and distribution of species to support management, conservation, and resource use decisions. USGS scientists advance detection and monitoring technologies to assess changes in fish and wildlife populations, biodiversity, and the health of ecosystems. The United States is planning to install 30 gigawatts of offshore marine and wi
Authors
Adam Sepulveda, Cheryl Morrison, Maggie Hunter, Mona Khalil

A genomic hotspot of diversifying selection and structural change in the hoary bat (Lasiurus cinereus)

BackgroundPrevious work found that numerous genes positively selected within the hoary bat (Lasiurus cinereus) lineage are physically clustered in regions of conserved synteny. Here I further validate and expand on those finding utilizing an updated L. cinereus genome assembly and additional bat species as well as other tetrapod outgroups.MethodsA chromosome-level assembly was generated by chromat
Authors
Robert S. Cornman

Stratigraphy, paleoflora, and tectonic setting of the Paleogene Sheep Creek volcanic field, central Alaska

In this paper, we provide new information on the stratigraphy and paleoflora of the Sheep Creek volcanic field in the Alaska Range that bolsters our understanding of a key interval in the tectonic, paleoclimate, and paleoenvironmental history of the northern Cordillera. Although the distribution and basic stratigraphy of these rocks have been previously reported, here we document the stratigraphic
Authors
Timothy White, David Sunderlin, Dwight Bradley

Carbon isotope trends across a century of herbarium specimens suggest CO2 fertilization of C4 grasses.

Increasing atmospheric CO2 is changing the dynamics of tropical savanna vegetation. C3 trees and grasses are known to experience CO2 fertilization, whereas responses to CO2 by C4 grasses are more ambiguous.Here, we sample stable carbon isotope trends in herbarium collections of South African C4 and C3 grasses to reconstruct 13C discrimination.We found that C3 grasses showed no trends in 13C discri
Authors
Isa del Toro, Madelon Florence Case, Allison Karp, Jasper Slingsby, A. Carla Staver

Retrospective review of the pathology of American pikas

American pikas (Ochotona princeps) are small lagomorphs that live in mountainous talus areas of western North America. Studies on the histopathology of American pikas are limited. We summarize here the clinical histories, and gross and histologic findings of 12 American pikas, including 9 captive (wild-caught) and 3 wild animals. Death was often attributed to stress (transport, handling, anesthesi
Authors
Adrienne Barrett, Kali Holder, Susan Knowles, Elise E. B. LaDouceur

A comparison of eDNA sampling methods in an estuarine environment on presence of longfin smelt (Spirinchus thaleichthys) and fish community composition

The loss of tidal wetlands in the San Francisco Bay estuary have led to declines in native fish presence. Restoration of tidal wetlands in this area has intensified, with a primary goal of increasing the number of native fishes. We compared the presence of longfin smelt in naturally accreted and beneficial dredge reuse wetlands as a measure of successful restoration. We used environmental DNA (eDN
Authors
Lizabeth Bowen, Shannon C. Waters, Lyndsay Lee Rankin, Karen M. Thorne, Daphne Gille, Susan De La Cruz, Isa Woo, Levi Lewis, Katie Karpenko, Cheryl Dean, Gregg Schumer

Best practices for genetic and genomic data archiving

Genetic and genomic data are collected for a vast array of scientific and applied purposes. Despite mandates for public archiving, data are typically used only by the generating authors. The reuse of genetic and genomic datasets remains uncommon because it is difficult, if not impossible, due to non-standard archiving practices and lack of contextual metadata. But as the new field of macrogenetics
Authors
Deborah M. Leigh, A. G. Vandergast, Maggie Hunter, Eric D. Crandall, W. Chris Funk, Colin J Garroway, Sean M. Hoban, Sara J. Oyler-McCance, Christian Rellstab, Gernot Segelbacher, Chloe Schmidt, Ella Vázquez-Domínguez, Ivan Paz-Vinas

Structural heterogeneity predicts ecological resistance and resilience to wildfire in arid shrublands

ContextDynamic feedbacks between physical structure and ecological function drive ecosystem productivity, resilience, and biodiversity maintenance. Detailed maps of canopy structure enable comprehensive evaluations of structure–function relationships. However, these relationships are scale-dependent, and identifying relevant spatial scales to link structure to function remains challenging.Objectiv
Authors
Andrii Zaiats, Megan E Cattau, David Pilliod, Rongsong Liu, Patricia Kaye T. Dumandan, Ahmad Hojatimalekshah, Donna M. Delparte, Trevor Caughlin