Publications
Browse more than 160,000 publications authored by our scientists over the past 100+ year history of the USGS. Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.
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Science Quality and Integrity
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Mission Area Publications
We are focused on some of the most significant issues society faces, and our science is making a substantial contribution to the well-being of the Nation and the world. Learn more about the major topics our research covers and the programs focused on those topics.
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How to select an objective function using information theory
In machine learning or scientific computing, model performance is measured with an objective function. But why choose one objective over another? According to the information-theoretic paradigm, the “best” objective function is whichever minimizes information loss. To evaluate different objectives, transform them into likelihoods. The ratios of these likelihoods represent how strongly we should pr
Authors
Timothy O. Hodson, Thomas M. Over, Smith Tyler, Lucy A. Marshall
Genome-wide association analysis of the resistance to infectious hematopoietic necrosis virus in two rainbow trout aquaculture lines confirms oligogenic architecture with several moderate effect quantitative trait loci
Infectious hematopoietic necrosis (IHN) is a disease of salmonid fish that is caused by the IHN virus (IHNV), which can cause substantial mortality and economic losses in rainbow trout aquaculture and fisheries enhancement hatchery programs. In a previous study on a commercial rainbow trout breeding line that has undergone selection, we found that genetic resistance to IHNV is controlled by the ol
Authors
Yniv Palti, Roger L. Vallejo, Maureen K. Purcell, Guangtu Gao, Kristy L. Shewbridge, Roseanna L. Long, Christopher Setzke, Breno O. Fragomeni, Hao Cheng, Kyle E. Martin, Kerrry A. Naish
Magnitude and frequency of floods in the Coastal Plain region of Louisiana, 2016
To improve flood-frequency estimates for rural streams in the Coastal Plain region of Louisiana, generalized least-squares regression techniques were used to relate corresponding annual exceedance probability streamflows for 211 streamgages in the region to a suite of explanatory variables that include physical, climatic, pedologic, and land-use characteristics of the streamgage drainage area. The
Authors
Paul A. Ensminger, Daniel M. Wagner, Amanda Whaling
Biodiversity loss reduces global terrestrial carbon storage
Natural ecosystems store large amounts of carbon globally, as organisms absorb carbon from the atmosphere to build large, long-lasting, or slow-decaying structures such as tree bark or root systems. An ecosystem’s carbon sequestration potential is tightly linked to its biological diversity. Yet when considering future projections, many carbon sequestration models fail to account for the role biodi
Authors
Sarah R. Weiskopf, Forest Isbell, Maria Isabel Arce-Plata, Moreno Di Marco, Mike Harfoot, Justin A. Johnson, Susannah B. Lerman, Brian W. Miller, Toni Lyn Morelli, Akira S. Mori, Ensheng Weng, Simon Ferrier
The SCEC/USGS community stress drop validation study using the 2019 Ridgecrest earthquake sequence
We introduce a community stress drop validation study using the 2019 Ridgecrest, California, earthquake sequence, in which researchers are invited to use a common dataset to independently estimate comparable measurements using a variety of methods. Stress drop is the change in average shear stress on a fault during earthquake rupture, and as such is a key parameter in many ground motion, rupture s
Authors
Annemarie S. Baltay, Rachel E Abercrombie, Shanna Xianhui Chu, Taka'aki Taira
Earthquake relocations delineate discrete a fault network and deformation corridor throughout Southeast Alaska and Southwest Yukon
Deformation in southeastern Alaska and southwest Yukon is governed by the subduction and translation of the Pacific-Yakutat plates relative to the North American plate in the St. Elias region. Despite notable historical seismicity and major regional faults, studies of the region between the Fairweather and Denali faults are complicated by glacial coverage and the remote setting. In the last decade
Authors
Katherine M. Biegel, Jeremy M. Gosselin, Jan Dettmer, Maurice Colpron, Eva Enkelmann, Jonathan Caine
Earthquake cycle mechanics during caldera collapse: Simulating the 2018 Kīlauea eruption
In multiple observed caldera-forming eruptions, the rock overlying a draining magma reservoir dropped downward along ring faults in sequences of discrete collapse earthquakes. These sequences are analogous to tectonic earthquake cycles and provide opportunities to examine fault mechanics and collapse eruption dynamics over multiple events. Collapse earthquake cycles have been studied with zero-dim
Authors
Joshua Allen Crozier, Kyle R. Anderson
Evaluating the effectiveness of joint species distribution modeling for fresh water fish communities within large watersheds
Accurately predicting species’ distributions is critical for the management and conservation of fish and wildlife populations. Joint Species Distribution Models (JSDMs) account for dependencies between species often ignored by traditional species distribution models. We evaluated how a JSDM approach could improve predictive strength for stream fish communities within large watersheds (the Chesapea
Authors
Paul McLaughlin, Kevin Krause, Kelly O. Maloney, Taylor E Woods, Tyler Wagner
Why do avian responses to change in Arctic green-up vary?
Global climate change has altered the timing of seasonal events (i.e., phenology) for a diverse range of biota. Within and among species, however, the degree to which alterations in phenology match climate variability differ substantially. To better understand factors driving these differences, we evaluated variation in timing of nesting of eight Arctic-breeding shorebird species at 18 sites over
Authors
Eveling A. Tavera, David B. Lank, David C. Douglas, Brett K. Sandercock, Richard B. Lanctot, Niels M. Schmidt, Jeroen Reneerkens, David H. Ward, Joel Bety, Eunbi Kwon, Nicolas Lecomte, Cheri L Gratto-Trevor, Paul A. Smith, Willow B. English, Sarah T. Saalfeld, Stephen C. Brown, H. River Gates, Erica Nol, Joseph R. Liebezeit, Rebecca L. McGuire, Laura McKinnon, Steve Kendall, Martin D. Robards, Megan Boldenow, David C. Payer, Jennie Rausch, Mikhail Soloviev, Diana V. Solovyeva, Steve Zack, Jordyn Stalwick, Kirsty E. B. Gurney
Pockmarks offshore Big Sur, California provide evidence for recurrent, regional, and unconfined sediment gravity flows
Recent surface ship multibeam surveys of the Sur Pockmark Field, offshore Central California, reveal >5,000 pockmarks in an area that is slated to host a wind farm, between 500- and 1,500-m water depth. Extensive fieldwork was conducted to characterize the seafloor environment and its recent geologic history, including visual observations with remotely operated vehicles, sediment core sampling, an
Authors
E. Lundsten, Charles K. Paull, R. Gwiazda, S. Dobbs, D.W. Caress, Linda A. Kuhnz, M. Walton, N. Nieminski, Mary McGann, Thomas Lorenson, Guy R. Cochrane, Jason A. Addison
Chronic wasting disease alters the movement behavior and habitat use of mule deer during clinical stages of infection
Integrating host movement and pathogen data is a central issue in wildlife disease ecology that will allow for a better understanding of disease transmission. We examined how adult female mule deer (Odocoileus hemionus) responded behaviorally to infection with chronic wasting disease (CWD). We compared movement and habitat use of CWD-infected deer (n = 18) to those that succumbed to starvation (an
Authors
Gabriel M. Barrile, Paul Cross, Cheynne Stewart, Jennifer L. Malmberg, Rhiannon P. Jakopak, Justin Binfet, Kevin Montieth, Brandon Werner, Jessica Jennings-Gaines, JA Merkle
Resilience is not enough: Toward a more meaningful rangeland adaptation science
Rangeland ecosystems, and their managers, face the growing urgency of climate change impacts. Researchers are therefore seeking integrative social-ecological frameworks that can enhance adaptation by managers to these climate change dynamics through tighter linkages among multiple scientific disciplines and manager contexts. Social-ecological framings, including resilience and vulnerability, are p
Authors
Hailey Wilmer, Daniel B. Ferguson, Maude Dinan, Eric Thacker, Peter B. Adler, Kathryn Bills Walsh, John B. Bradford, Mark Brunson, Justin D. Derner, Emile Elias, Andrew J Felton, Curtis A. Gray, Christina Greene, Mitchel P McClaran, Robert K. Shriver, Mitch Stephenson, Katharine Nash Suding