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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 4348

Black Terns (Chlidonias niger) beyond the breeding grounds: Occurrence, relative density, and habitat associations in the northern Gulf of Mexico

North American Black Terns (Chlidonias niger) breed primarily in the Prairie Pothole region of southern Canada and the northern United States, winter in Central and South American waters, and often migrate through the northern Gulf of Mexico (nGoM). This species has exhibited long-term population declines and is exposed to a myriad of anthropogenic threats in the nGoM, including oil spills, with a
Authors
Pamela E. Michael, Jeffrey S. Gleason, J. Christopher Haney, Kathy M. Hixson, Yvan G. Satgé, Patrick Jodice

Multistage time-to-event models improve survival inference by partitioning mortality processes of tracked organisms

Advances in tagging technologies are expanding opportunities to estimate survival of fish and wildlife populations. Yet, capture and handling effects could impact survival outcomes and bias inference about natural mortality processes. We developed a multistage time-to-event model that can partition the survival process into sequential phases that reflect the tagged animal experience, including han
Authors
Suresh A. Sethi, Alex L. Koeberle, Anna J. Poulton, Daniel W. Linden, Duane R. Diefenbach, Frances E. Buderman, Mary Jo Casalena, Kenneth Duren

Viability modeling for decision support with limited data: A lizard case study

Plateau spot-tailed earless lizards, Holbrookia lacerata, are a species of ground lizard in central Texas that are under review for listing as endangered under the US Endangered Species Act, but heretofore no predictive models of population dynamics or viability have been developed. We used limited available data and published demographic rates in a PVA model to predict future status of these liza
Authors
Ashley B.C. Goode, Nathan Allan, Conor P. McGowan

Predicting responses to climate change using a joint species, spatially dependent physiologically guided abundance model

Predicting the effects of warming temperatures on the abundance and distribution of organisms under future climate scenarios often requires extrapolating species–environment correlations to climatic conditions not currently experienced by a species, which can result in unrealistic predictions. For poikilotherms, incorporating species' thermal physiology to inform extrapolations under novel thermal
Authors
Christopher A. Custer, Joshua S. North, Erin M. Schliep, Michael R. Verhoeven, Gretchen J.A. Hansen, Tyler Wagner

Fish beta diversity associated with hydrologic and anthropogenic disturbance gradients in contrasting stream flow regimes

Understanding the role of hydrologic variation in structuring aquatic communities is crucial for successful conservation and sustainable management of native freshwater biodiversity. Partitioning beta diversity into the additive components of spatial turnover and nestedness can provide insight into the forces driving variability in fish assemblages across stream flow regimes. We examined stream fi
Authors
John Tyler Fox, Cyndy Loftin

Documenting historical anchorworm parasitism of introduced warmwater fishes in the Willamette River Basin, Oregon

Anchorworms (Lernaea spp.) are freshwater parasitic copepods that use a wide range of hosts. Yet little is known about their prevalence, distribution, and which species are their primary fish hosts in the state of Oregon. Institutional fish collections serve as banks which allow investigators to look at historical fish specimens and ascertain their health status at the time of their collection. We
Authors
Elena Eberhardt, Christina Amy Murphy, William J. Gerth, Peter Konstantinidis, Ivan Arismendi

Fish size structure analysis via ordination: A visualization aid

ObjectiveVisual aids like length-frequency histograms are widely used to examine fish population status and trends; however, comparing multiple histograms simultaneously becomes cumbersome and inefficient. Complicating matters further, overlaying covariates on histograms to highlight connections with length frequencies can be challenging. An alternative, and the subject of this Perspective, is to
Authors
Leandro E. Miranda

Fish assemblage and functional trait responses to small-dam removal

Dams are one of the greatest threats to freshwater biodiversity and efforts to remove dams to restore riverine systems are increasing. However, dam-removal studies have primarily focused on taxonomic responses to large dam removals with little work on the functional trait responses of fish to small-dam removals; such a focus limits the application of results in regions with different taxonomic com
Authors
Luke Max Bower, C. A. Marion, M. K. Scott, Kevin Kubach, Andrew Gelderloos

Retention of p-Chip microtransponders and posttagging survival of small-bodied stream fishes

ObjectiveObtaining demographic rates often requires complex open-population capture–mark–recapture (CMR) study designs. Conducting such studies for small-bodied fishes has been limited in part by excessive mortality after tagging procedures and poor tag retention. As new tag types emerge, information regarding fish survival and tag retention over varying time scales may benefit resource managers t
Authors
Joseph Spooner, Jonathan J Spurgeon

Delayed positive responses of snowshoe hares to prescribed burning in a fire-adapted ecosystem

Wildlife populations near the periphery of a species’ range are vulnerable to changes in habitat conditions and climate. However, habitat management and maintenance can help with the persistence of these susceptible populations. Snowshoe hare (Lepus americanus) populations near the southern extent of their range are at risk of extirpation because of changing winter conditions, coupled with reduced
Authors
Laura C. Gigliotti, Emily S. Boyd, Duane R. Diefenbach

Variation in Cooper's Hawk (Accipiter cooperii) eggshell thickness: DDT, measurement methods, and location

We collected Cooper's Hawk (Accipiter cooperii) eggshells from nests in the Tucson, Arizona, USA, area in the 1990s incidental to other activities and compared them to pre-DDT Cooper's Hawk eggshells (119 museum specimens from 14 states, 1894–1939) ranging from 0.284–0.402 mm (x̄= 0.348 mm, SD = 0.0243) and we also compared them to reported thicknesses found in the literature. We found that within
Authors
G. M. Santolo, Clint W. Boal

Designing count-based studies in a world of hierarchical models

Advances in hierarchical modeling have improved estimation of ecological parameters from count data, especially those quantifying population abundance, distribution, and dynamics by explicitly accounting for observation processes, particularly incomplete detection. Even hierarchical models that account for incomplete detection, however, cannot compensate for data limitations stemming from poorly p
Authors
Quresh S. Latif, Jonathon Joseph Valente, Alison Johnston, Kayla L. Davis, Frank A. Fogarty, Adam W. Green, Gavin M. Jones, Matthias Leu, Nicole L. Michel, David C. Pavlacky, Elizabeth A. Rigby, Clark S. Rushing, Jamie S. Sanderlin, Morgan W. Tingley, Qing Zhao
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