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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 4348

Developing a stochastic hydrological model for informing lake water level drawdown management

Winter drawdown (WD) is a common lake management tool for multiple purposes such as flood control, aquatic vegetation reduction, and lake infrastructure maintenance. To minimize adverse impacts to a lake’s ecosystem, regulatory agencies may provide managers with general guidelines for drawdown and refill timing, drawdown magnitude, and outflow limitations. However, there is significant uncertainty
Authors
Xinchen He, Konstantinos Andreadisa, Allison H. Roy, Abhiskek Kumar, Caitlyn Butler

Evaluating a tandem human-machine approach to labelling of wildlife in remote camera monitoring

Remote cameras (“trail cameras”) are a popular tool for non-invasive, continuous wildlife monitoring, and as they become more prevalent in wildlife research, machine learning (ML) is increasingly used to automate or accelerate the labor-intensive process of labelling (i.e., tagging) photos. Human-machine hybrid tagging approaches have been shown to greatly increase tagging efficiency (i.e., time t
Authors
Laurence A. Clarfeld, Alexej P.K. Sirén, Brendan M. Mulhall, Tammy L. Wilson, Elena Bernier, John Farrell, Gus Lunde, Nicole Hardy, Katherine D. Gieder, Robert Abrams, Sue Staats, Scott McLellan, Therese M. Donovan

Stream hydrology and a pulse subsidy shape patterns of fish foraging

Pulsed subsidy events create ephemeral fluxes of hyper-abundant resources that can shape annual patterns of consumption and growth for recipient consumers. However, environmental conditions strongly affect local resource availability for much of the year, and can heavily impact consumer foraging and growth patterns prior to pulsed subsidy events. Thus, a consumer's capacity to exploit pulse subsid
Authors
Kevin Fitzgerald, J. Ryan Bellmore, Jason B. Fellman, Matthew L. H. Cheng, Claire Delbecq, Jeffrey A. Falke

Intestinal lesions and parasites associated with senescence and prespawn mortality in Chinook Salmon (Oncorhynchus tshawytscha)

Prespawn mortality (PSM) presents a major problem for the recovery of spring Chinook Salmon (Oncorhynchus tshawytscha) populations. In the Willamette River, Oregon, PSM exceeds 90% in some years but factors explaining it are not well understood. We examined intestinal tissue samples using histological slides from over 783 spring Chinook Salmon collected between 2009 and 2021, which included tissue
Authors
S. Nervino, T. Polley, James Peterson, C.B. Schreck, M.L. Kent, J.D. Alexander

Effect of feeding history on metabolic rate of largemouth bass (Micropterus nigricans): implications for bioenergetics models

Metabolic rate is a key parameter in fish energy budgets that strongly influences the output of bioenergetics models. In this study, we tested the hypothesis that metabolic rate varies with growth history of age-1 largemouth bass Micropterus nigricans Cuvier, 1828. Two groups of fish were fed alternating maintenance or ad libitum rations of fathead minnow Pimephales promelas Rafinesque, 1820, so t
Authors
Steven H. Ranney, Steven R. Chipps, David H. Wahl

Going with the floe: Sea-ice movement affects distance and destination during Adélie penguin winter movements

Seasonal migration, driven by shifts in annual climate cycles and resources, is a key part of the life history and ecology of species across taxonomic groups. By influencing the amount of energy needed to move, external forces such as wind and ocean currents are often key drivers of migratory pathways exposing individuals to varying resources, environmental conditions, and competition pressures im
Authors
Dennis Jongsomjit, Amelie Lescroël, Annie Schmidt, Simeon Lisovski, David G. Ainley, Ellen Hines, Megan Elrod, Katie Dugger, Grant Ballard

Updated decision analysis to inform multi-species salmonine management in Lake Michigan

The recreational fishery for salmonine species in Lake Michigan (lake trout, Chinook salmon, coho salmon, steelhead, and brown trout) is largely maintained through stocking. Decisions about how many of each species to stock require an understanding of how to maintain a sustainable balance of predators (salmonine species) to prey (alewife) in the lake. The current models used to make these decision
Authors
Kelly Filer Robinson, Michael L. Jones, Richard Clark, Brian Roth, Jory Jonas, Iyob Tsehaye, Matthew S. Kornis, Benjamin A. Turschak, Daniel O’Keefe, Brian Brenton

Model-based surveillance system design under practical constraints with application to white-nose syndrome

Infectious diseases are powerful ecological forces structuring ecosystems, causing devastating economic impacts and disrupting society. Successful prevention and control of pathogens requires knowledge of the current scope and severity of disease, as well as the ability to forecast future disease dynamics. Assessment of the current situation as well as prediction of the future conditions, rely on
Authors
Gina Oh, Srikanth Aravamuthan, Ting Fung Ma, Juan Francisco Mandujano Juan Francisco
Reyes, Anne Ballmann, Trevor J. Hefley, Ian McGahan, Robin Russell, Daniel P. Walsh, Juntao Zhu

A mixture of Nalbuphine, Azaperone, and Medetomidine for Immobilizing Ringtail (Bassariscus astutus)

We evaluated a combination of nalbuphine HCl (40 mg/mL), azaperone tartrate (10 mg/mL), and medetomidine HCl (10 mg/mL), a combination known as NAM or NalMed-A, in 23 ringtails (Bassariscus astutus) during 29 handling events for a radio-collaring study in southern Oregon, US, from August 2020 to March 2022. The combination was delivered to ringtails by hand injection at 0.075 mL NAM per estimated
Authors
Lindsay N. Somers, DeWaine H. Jackson, Katie Dugger, Julia D. Burco

Evidence for infection influencing survival of the freshwater copepod Salmincola californiensis, a parasite of Pacific salmon and trout

ObjectiveWe explore apparent infection of Salmincola californiensis arising during investigations involving this lernaeopodid copepod parasitic on Pacific salmon and trout Oncorhynchus spp.MethodsWe noted occasional unusual coloration of adult female copepods collected from the wild. These females were bright blue and pink in contrast to the cream white coloration characteristic of the copepod. We
Authors
Christina Amy Murphy, William Gerth, Travis Neal, Kelsi Antonelli, Justin L. Sanders, Ivan Arismendi

Effects of solar energy development on ants in the Mojave Desert

Land-use change from solar energy development may affect desert ecosystems and the soils, plants, and animals therein, yet our understanding of these interactions is nascent. With their ubiquity, criticality as ecosystem constituents, and sensitivity to environmental variation, ants may be useful study organisms for elucidating ecological effects of solar energy development in deserts. Our objecti
Authors
Steven Mark Grodsky, Karl A. Roeder, Joshua W. Campbell

Change-point models for identifying behavioral transitions in wild animals

Animal behavior can be difficult, time-consuming, and costly to observe in the field directly. Innovative modeling methods, such as hidden Markov models (HMMs), allow researchers to infer unobserved animal behaviors from movement data, and implementations often assume that transitions between states occur multiple times. However, some behavioral shifts of interest, such as parturition, migration i
Authors
K.P. Gundermann, Duane R. Diefenbach, W. David Walter, A Corondi, J.E. Banfield, B.D. Wallingford, D.P. Stainbrook, C.S. Rosenberry, F.E. Buderman
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