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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 4348

Conservation at the nexus of niches: Multidimensional niche modeling to improve management of Prairie Chub

ObjectiveA central challenge in applied ecology is understanding how organisms are spatially and temporally distributed and how management might be tailored to maintain or restore species distributions. The niche concept is central to understanding species distributions, but the diversity of niche definitions requires that multiple dimensions be considered. For example, the Grinnellian niche conce
Authors
Zachary D. Steffensmeier, Shannon K. Brewer, Maeghen Wedgeworth, Trevor A. Starks, Anthony W. Rodger, Erin Nguyen, Joshuah S. Perkin

Prey ration, temperature, and predator species influence digestion rates of prey DNA inferred from qPCR and metabarcoding

Diet analysis is a vital tool for understanding trophic interactions and is frequently used to inform conservation and management. Molecular approaches can identify diet items that are impossible to distinguish using more traditional visual-based methods. Yet, our understanding of how different variables, such as predator species or prey ration size, influence molecular diet analysis is still inco
Authors
Cory Dick, Wesley A. Larson, Kirby Karpan, Diana S. Baetscher, Yue Shi, Suresh Sethi, Nann A. Fangue, Mark J. Henderson

Effects of sucker gigging on fish populations in Oklahoma scenic rivers

Suckers (Catostomidae) are ecologically important, and some support popular fisheries, despite not being considered ‘sport fish’ in most states. Gigging suckers is a popular and culturally significant pastime in the Ozark Highlands, but little is known about the effect of gigging harvest on population dynamics of suckers. Therefore, research is needed to determine safe levels of sucker harvest tha
Authors
D. Zetner, D. E. Shoup, Shannon K. Brewer

Toxic algae in inland waters of the conterminous United States—A review and synthesis

Cyanobacteria are the most common toxigenic algae in inland waters. Their toxins can affect the health of aquatic and terrestrial organisms, including humans. Other algal groups, such as haptophytes (e.g., Prymnesium parvum) and euglenoids (e.g., Euglena sanguinea), can also form harmful algal blooms (HABs) whose toxins cause injury to aquatic biota but currently have no known effects on human hea
Authors
Reynaldo Patiño, Victoria Christensen, Jennifer L. Graham, Jane Rogosch, Barry H. Rosen

The persistence of time: The lifespan of Bacillus anthracis spores in environmental reservoirs

Anthrax is a lethal bacterial zoonosis primarily affecting herbivorous wildlife and livestock. Upon host death Bacillus anthracis vegetative cells form spores capable of surviving for years in soil. Anthrax transmission requires host exposure to large spore doses. Thus, conditions that facilitate higher spore concentrations or promote spore survival will increase the probability that a pathogen re
Authors
Zoë R. Barandongo, Amelie C. Dolfi, Spencer A. Bruce, Kristyna Rysava, Yen-Hua Huang, Hendrina Joel, Ayesha Hassim, Pauline L. Kamath, Henriette van Heerden, Wendy Christine Turner

Contemporary record and photographs of the rarely seen and poorly known Mona Blindsnake, Antillotyphlops monensis (Schmidt, 1926), with comments on its ecology and conservation

No abstract available.
Authors
Danielle Rivera, Jan P. Zegarra, Cielo E. Figuerola-Hernández, Nahíra Arocho-Hernández, Nathan J. Hostetter, Jaime A. Collazo, Rayna C. Bell

Bayesian spatio-temporal survival analysis for all types of censoring with application to a wildlife disease study

In this article, we consider modeling arbitrarily censored survival data with spatio-temporal covariates. We demonstrate that under the piecewise constant hazard function, the likelihood for uncensored or right-censored subjects is proportional to the likelihood of multiple conditionally independent Poisson random variables. To address left- or interval-censored subjects, we propose to impute the
Authors
Kehui Yao, Jun Zhu, Daniel J. O'Brien, Daniel P. Walsh

Understanding drivers of mercury in lake trout (Salvelinus namaycush), a top-predator fish in southwest Alaska's parklands

Mercury (Hg) is a widespread element and persistent pollutant, harmful to fish, wildlife, and humans in its organic, methylated form. The risk of Hg contamination is driven by factors that regulate Hg loading, methylation, bioaccumulation, and biomagnification. In remote locations, with infrequent access and limited data, understanding the relative importance of these factors can pose a challenge.
Authors
Krista K. Bartz, Michael P. Hannam, Tammy L. Wilson, Ryan F. Lepak, Jacob M. Ogorek, Daniel B. Young, Collin A. Eagles-Smith, David P. Krabbenhoft

Occupancy and activity patterns of nine-banded armadillos (Dasypus novemcinctus) in a suburban environment

The geographic range of the nine-banded armadillo (Dasypus novemcinctus) has rapidly been expanding within the United States for the last 150 years. One of the factors contributing to this astounding range expansion is the species’ ability to survive in and colonize human-dominated areas. Despite the fact that armadillos live alongside humans in numerous towns and cities across the Southeastern, S
Authors
Brett Alexander DeGregorio, Matthew R. McElroy, Emily P. Johansson

Return(s) on investment: Restoration spending in the Columbia River Basin and increased abundance of salmon and steelhead

The decline in salmon and steelhead populations in the Columbia River Basin has been well documented, as have the decades-long, $9 billion restoration spending efforts by federal and state agencies. These efforts are mainly tied to Endangered Species Act (ESA) mandates for recovery of wild, naturally-spawning threatened or endangered fish species. The impact of these efforts remains poorly underst
Authors
William K. Jaeger, Mark David Scheuerell

Waterbody size predicts bank- and boat-angler efforts

Bank- and boat-angler efforts are logistically difficult and costly to estimate, preventing landscape-scale estimates that are required to address current and future challenges (e.g., climate change, invasive species) for inland recreational fisheries. Using a large Nebraska, USA, recreational fishery dataset (N = 67 waterbodies), we demonstrate that waterbody size can be used to predict bank- and
Authors
D.S. Kanee, Kevin L. Pope, Keith D. Koupal, M.A. Pegg, C.J. Chizinski, M.A. Kaemingk

Conserving habitat for migratory ungulates: How wide is a migration corridor?

Conserving migratory ungulates relies on the analysis of GPS collar data and associated maps of migration corridors to inform management and policy actions. Current methods for identifying migratory corridors use complex statistical models designed to account for movement uncertainty rather than estimating the amount of space required by animals to migrate. Furthermore, such methods can complicate
Authors
Jerod Merkle, Blake Lowrey, Cody F. Wallace, L. Embere Hall, Luke Wilde, Matthew Kauffman, Hall Sawyer
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