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An official USGS software project is code reviewed and approved at the bureau-level for distribution.

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Tests of multistate CJS models to estimate survival conditioned on a partially-observed latent state

Polar bears (Ursus maritimus) of the Southern Beaufort Sea (SBS) historically spent nearly the entire year on the sea ice but are increasingly using land habitat as sea ice becomes less available seasonally due to climate warming. The U.S. Geological Survey, Alaska Science Center maintains a research program on the SBS polar bear subpopulation and one important research question is whether habitat

Conservation Efforts Database Batch Upload Template and User Manual (Sagebrush Module)

This ArcGIS Pro project template is being provided in support of scientists who wish to upload data to the Conservation Efforts Database (CED). This software release contains all of the source code and instructions to use the project template, including the tools that come with it, to upload large quantities of data to the CED.

Conservation Efforts Database Batch Upload Template and User Manual (Gunnison Sage-grouse Recovery Module)

This ArcGIS Pro project template is being provided to support scientists who wish to upload data to the Conservation Efforts Database (CED). This software release contains all of the source code and instructions to use the project template, including the tools that come with it, to upload large quantities of data to the CED.

Winter Drawdown

The Google Earth Engine (GEE) code was written in JavaScript which can derive water area and water level time series data of multiple lakes for specified date range. Data derived from GEE code were used in classifying winter drawdown lakes and to derive winter drawdown metrics (using python code in Jupyter Notebook) in our submitted manuscript to the Journal of Environmental Management. We also tr

U.S. Geological Survey Hydrologic Toolbox version 1.1.0 software archive

This is version 1.1.0 of the Hydrologic Toolbox software.

ModelMuse Version 5.2

This version of ModelMuse adds support for MODFLOW-OWHM version 2, SUTRA version 4, and additional packages in MODFLOW 6.

Comparing maximum likelihood and Bayesian methods for fitting Hidden Markov Models to multi-state capture recapture data of invasive Silver Carp in the Illinois River

This repository contains the data, code for modeling and analysis, and publication markdown documents for a comparison of various methods for fitting multi-state models, including maximum likelihood and Bayesian approaches via R.

ModelMuse: A Graphical User Interface for Groundwater Models

ModelMuse is a graphical user interface (GUI) for the U.S. Geological Survey (USGS) models MODFLOW 6, MODFLOW–2005, MODFLOW-LGR, MODFLOW-LGR2, MODFLOW-NWT, MODFLOW-CFP, MODFLOW-OWHM versions 1 and 2, MODPATH, ZONEBUDGET, PHAST, SUTRA 2.2, SUTRA 3.0, SUTRA 4.0,  MT3D-USGS, and WellFootprint and the non-USGS programs MT3DMS and PEST.

Evaluating the effectiveness of joint species distribution modeling for riverine fish communities

Species Distribution Models (JSDMs) allow for accounting for both environmental predictors and species dependencies within a single statistical modeling frameworks. However, it is unclear under what conditions incorporating residual species dependencies (conditional predictions) might outperform predictions made using only environmental information (marginal predictions). Here, we evaluated how a

Landslide Automated Geospatial Processing Software Using a High-Performance Computer

This software contains the data processing for nationwide landslide research described in Mirus et al. 2024, Parsimonious landslide-susceptibility modeling at continental scales: Application for the conterminous United States, Hawaii, Alaska, and Puerto Rico. To perform geospatial processing over the large geographic area, each 1/3 arc-second (10-meter) Digital Elevation Model (DEM) is processed i

Vignette Bayesian Site Occupancy Model Bat Acoustic Data

The purpose of this document is to demonstrate how data collected by the Pacific Northwest Bat Hub, a member of the North American Bat Monitoring Program (NABat), may be used to make inferences about species occurrence. As motivation, we consider occurrence data collected on Silver-haired bats (Lasionycteris noctivagans, LANO) in Oregon and Washington in 2019. In particular, we are interested in t

Conservation Efforts Database Batch Upload Template and User Manual (Cutthroat Trout Recovery Module)

This ArcGIS Pro project template is being provided to the public in support of scientists who wish to upload data to the Conservation Efforts Database (CED).