Software

Line-transect distance sampling (LTDS) surveys are commonly used to estimate abundance of animals or objects. In terrestrial LTDS surveys of gopher tortoise (Gopherus polyphemus) burrows, the presence of ground-level vegetation significantly decreases detection of burrows of all sizes, but no field or analytical methods exist to control for spatially heterogeneous vegetation obstruction as a sourc

The Hydrologic Analysis Package (HASP) can retrieve groundwater level and groundwater quality data, aggregate these data, plot them, and generate basic statistics. One of the benefits of HASP is its ability to aggregate two time-series of data into one record and generate statistics and graphics on hat record. By merging two data sets together, users can view and manipulate a much longer record o

The code 'Keys Carbonate Budget Calculations', written in R (v.4.0.4; https://www.R-project.org/), uses benthic coral-reef survey data and fish survey data to calculate coral-reef carbonate budgets following the ReefBudget v2 methodology (http://geography.exeter.ac.uk/reefbudget/; Perry and Lange, 2019). The carbonate budgets include estimates (means +/- standard errors) of gross carbonate product

MODFLOW 6 - LACP uses the MODFLOW 6.4.0 source code and modifies the Horizontal Flow Barrier (HFB) package to allow simulation of vertical hydraulic conductance (CV) by connection rather than by cell, an option available for previous versions of MODFLOW (USG). The MODFLOW 6 - LACP HFB package is used to simulate thin, vertical, and low-permeability geologic features (barriers) and acts to supplem

We have archived the derived data files and R/JAGS code for our analysis as a U.S. Geological Survey data release (link ). The code is divided into three R scripts: 1) pbdens_landdens_JWM.r contains R code for fitting hierarchical Bayesian models of polar bear maternal den abundance and distribution for the Southern Beaufort Sea (SBS) subpopulation, 1982-2015. This script requires the installation

This application was created to visualize and interact with the ecological data from the ongoing monitoring effort on two previously restored streams in Reston, Virginia - Snakeden Branch and The Glade. The “Reston monitoring program” includes the measurement of hydrologic, water-quality, and ecological data and evaluations of changes in these measurements over time. For more information about the

We developed a model allowing for the application of treatment strategies to bat populations at risk of severe mortality from WNS. The model allows the bat population to exist within a network of hibernacula and updates survival, reproduction, movement, treatment applications, and treatment related disturbance annually. For simplicity, the effects of WNS are experienced across all hibernacula on t

Greater sage-grouse (Centrocercus urophasianus) are landscape-scale sagebrush obligate species and an important gamebird and iconic species of the western United States. They occupy the sagebrush biome in western North America, extending east of the Sierra Nevada/Cascade Mountain ranges to the western regions of the Great Plains of the United States. Sage-grouse are one of the most closely monitor

This project contains the repository component of a modular catalog implementation.

This Python package is intended to assist with summarization of landscape information to stream watershed drainages (local summaries). Methods are built in a generalized way and are intended to support efforts for any stream network having polygon based drainage watersheds. The output of these methods can be used to calculate stream network summaries using xstrm.

We present software that creates least-cost path spanning trees, a least-cost path minimum spanning tree, and graph theory centrality measures. The software was developed to support identification of population structures--specifically, greater sage-grouse (Centrocercus urophasianus), but also support other species or graph theory applications where least-cost paths are desired. We used habitat pa