Fish and Aquatic Species Publications

Nuclear inclusion X (NIX) is a gamma proteobacteria that infects the nuclei of gill epithelial cells in Pacific razor clams. NIX has been associated with clam die-offs in coastal Washington. A quantitative PCR (qPCR) assay was developed to detect NIX in Pacific razor clams, and assay specificity was confirmed by chromogenic in situ hybridization (CISH). Both tests were applied to evaluate NIX infe

Quantifiable estimates of predator–prey interactions and relationships in aquatic habitats are difficult to obtain and rare, especially when individuals cannot be readily observed. To overcome this observational impediment, imaging sonar was used to assess the cooccurrence of predator‐size fish and juvenile salmonids, Oncorhynchus spp., at the entrance to a floating surface collector (FSC) in the

High-head dams are migration barriers for Pacific salmon Oncorhynchus spp. in many river systems and recovery measures for impacted stocks are limited. Trap-and-haul has been widely used in attempts to facilitate recovery but information from existing programs has not been synthesized to inform improvements to aid recovery of salmonids in systems with high-head dams. We reviewed 17 trap-and-haul p

Coastal cutthroat trout [Oncorhynchus clarkii clarkii (Richardson, 1836)] from the marine waters of Puget Sound, WA, was documented as a new host for the ectoparasite Argulus pugettensis (Dana, 1852). The prevalence of A. pugettensis was 66% (49 of 74) on cutthroat trout and 0% (0 of 55) on coho salmon [O. kisutch (Walbaum, 1792)] collected during the winter of 2017/2018. Infestations occurred mos

Puget Sound is a critical part of the Pacific Northwest, both culturally and economically. Eelgrass beds are an important feature of Puget Sound and are known to influence fish assemblages. As part of a larger site-characterization effort, and to gain a better understanding of the fish assemblages in Bellingham Bay, Washington, four eelgrass beds (Zostera marina) along the shoreline were surveyed.

We measured polychlorinated biphenyls (PCBs) in multiple age and size classes of Pacific sand lance (Ammodytes personatus), including eggs, young-of-the year, and adults to evaluate maternal transfer as a pathway for contaminant uptake and to add to the limited information on the occurrence of PCBs in sand lance in Puget Sound. Sampling was replicated at an urban embayment (Eagle Harbor) and a sta

The ubiquity of Vibrio spp. throughout the coastal marine waters of the Pacific Northwest of North America raises questions about the susceptibility of native marine fishes, including Pacific herring (Clupea pallasii). Early reports of Vibriolike disease (Rucker et al., 1954; Walford, 1958) and Vibrio sp. isolations (Pacha & Kiehn, 1969) in Pacific herring remain questionable because both occurred

We measured food availability and diet composition of juvenile salmonids over multiple years and seasons before and during the world’s largest dam removal on the Elwha River, Washington State. We conducted these measurements over three sediment-impacted sections (the estuary and two sections of the river downstream of each dam) and compared these to data collected from mainstem tributaries not dir

Anthropogenic dewatering of aquatic habitats can cause stranding and mortality of burrowed larval lampreys; however, the effects of dewatering have not been quantified. We assessed: (a) changes in spatial distribution, abundance, and emergence of larvae dewatered at Leaburg Reservoir (OR); (b) emergence and mortality of larvae dewatered in a laboratory; and (c) bias, precision, and interpretation

Environmental DNA (eDNA) has emerged as a potentially powerful tool for use in conservation and resource management, including for tracking the recolonization dynamics of fish populations. We used eDNA to assess the effectiveness of dam removal to restore fish passage on the Elwha River in Washington State (USA). Using a suite of 11 species‐specific eDNA polymerase chain reaction (PCR) assays, we

Chinook Salmon (Oncorhynchus tshawytscha) are increasingly vulnerable to anthropogenic activities and climate change, especially at their most southern species range in California’s Central Valley. There is considerable interest in understanding stressors that contribute to population decline and in identifying management actions that reduce the impacts of those stressors. Along the west coast of

Smallmouth bass (Micropterus dolomieu) predation on subyearling fall Chinook salmon (Oncorhynchus tshawytscha) was examined in the Snake River (USA) to identify seasonal and habitat-related changes in bass diets, and associated subyearling consumption and loss in various riverine and impounded reaches. Smallmouth bass diets reflected opportunistic foraging that at times showed predation on subyear