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Publications

Browse more than 150,000 publications authored by our scientists over the past 100+ year history of the USGS.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.

Upper Midwest Environmental Sciences Center Publications

Filter Total Items: 3223

The complete mitochondrial genome of Hine’s emerald dragonfly (Somatochlora hineana Williamson) via NGS sequencing

Here, we report the complete mitochondrial genome of the endangered Hine’s emerald dragonfly (HED), Somatochlora hineana Williamson. Data were generated via next generation sequencing (NGS) and assembled using a mitochondrial baiting and iterative mapping approach. The full length circular genome is 15,705 bp with 26.6% GC content. It contains the typical metazoan set of 37 genes: 13 protein-codin
Authors
Craig Jackson, S. Grace McCalla, Jon Amberg, Daniel Soluk, Hugh Britten

Separable correlation and maximum likelihood

We consider estimation of the covariance matrix of a multivariate normal distribution when the correlation matrix is separable in the sense that it factors as a Kronecker product of two smaller matrices. A computationally convenient coordinate descent-type algorithm is developed for maximum likelihood estimation. Simulations indicate our method often gives smaller estimation error than some common
Authors
Karl Oskar Ekvall, Brian R. Gray

Ethanol and sodium acetate as a preservation method to delay degradation of environmental DNA

Environmental DNA (eDNA) samples that are collected from remote locations depend on rapid stabilization of the DNA. The degradation of eDNA in water samples is minimized when samples are stored at ≤ 4 °C. Developing a preservation technique to maintain eDNA integrity at room temperature would allow a wider range of locations to be sampled. We evaluated an ethanol and sodium acetate solution to mai
Authors
Bridget A. Ladell, Liza R. Walleser, S. Grace McCalla, Richard A. Erickson, Jon Amberg

Profiles of digestive enzymes of two competing planktivores, silver carp and gizzard shad, differ

Typically, studies in digestive physiology in fish focus on a few enzymes and provide insight into the specific processes of the enzyme in a targeted species. Comparative studies assessing a wide number of digestive enzymes on fishes that compete for food resources are lacking, especially in the context of an introduced species. It is generally thought that the invasive silver carp (SVC; Hypophtha
Authors
Jon Amberg, Nathan R. Jensen, Richard A. Erickson, Blake W. Sauey, Craig Jackson

Temperature-influenced energetics model for migrating waterfowl

Climate and weather affect avian migration by influencing when and where birds fly, the energy costs and risks of flight, and the ability to sense cues necessary for proper navigation. We review the literature of the physiology of avian migration and the influence of climate, specifically temperature, on avian migration dynamics. We use waterfowl as a model guild because of the ready availability
Authors
Kevin Aagaard, Wayne E. Thogmartin, Eric V. Lonsdorg

Assessing the efficacy of corn-based bait containing antimycin-a to control common carp populations using laboratory and pond experiments

Strategic use of oral toxicants could allow for practical and sustainable control schemes for the invasive common carp (Cyprinus carpio, or ‘carp’) if a toxicant selectively targeted carp and not native species. In this study, we incorporated antimycin-a (ANT-A), a known fish toxicant, into a corn-based bait and conducted a series of experiments to determine its toxicity, leaching rate, and specie
Authors
Joshua R. Poole, Blake W. Sauey, Jon Amberg, Przemyslaw G. Bajer

Reproductive success and contaminant associations in tree swallows (Tachycineta bicolor) used to assess a Beneficial Use Impairment in U.S. and Binational Great Lakes’ Areas of Concern

During 2010-2014, tree swallow (Tachycineta bicolor) reproductive success was monitored at 68 sites across all 5 Great Lakes, including 58 sites located within Great Lakes Areas of Concern (AOCs) and 10 non-AOCs. Sample eggs were collected from tree swallow clutches and analyzed for contaminants including polychlorinated biphenyls (PCBs), dioxins and furans, polybrominated diphenyl ethers, and 34
Authors
Christine M. Custer, Thomas W. Custer, Matthew A. Etterson, Paul Dummer, Diana R. Goldberg, J. Christian Franson

Slow and steady wins the race? Future climate and land use change leaves the imperiled Blanding's turtle (Emydoidea blandingii) behind

Climate change is accompanied by shifts in species distributions, as portions of current ranges become less suitable. Maintaining or improving landscape connectivity to facilitate species movements is a primary approach to mitigate the effects of climate change on biodiversity. However, it is not clear how ongoing changes in land use and climate may affect the existing connectivity of landscapes.
Authors
Christopher M. Hamilton, Brooke L. Bateman, Jessica M. Gorzo, Brendan Reid, Wayne E. Thogmartin, M. Zachariah Peery, Patricia J. Heglund, Volker C. Radeloff, Anna M. Pidgeon

Lethal and sublethal responses of native mussels (Unionidae: Lampsilis siliquoidea and Lampsilis higginsii) to elevated carbon dioxide

Levels of carbon dioxide (CO2) that have been proposed for aquatic invasive species control (24 000 – 96 000 μatm partial pressure of CO2 (PCO2); 1 atm = 101.325 kPa) were tested on two juvenile mussels, the fatmucket (Lampsilis siliquoidea) and the US federally endangered Higgins’ eye (Lampsilis higginsii). A suite of responses (survival, growth, behavior, and gene expression) were measured after
Authors
Diane L. Waller, Michelle R. Bartsch, Lynn A. Bartsch, Craig Jackson

U.S. Geological Survey continuous monitoring workshop—Workshop summary report

Executive SummaryThe collection of high-frequency (in other words, “continuous”) water data has been made easier over the years because of advances in technologies to measure, transmit, store, and query large, temporally dense datasets. Commercially available, in-situ sensors and data-collection platforms—together with new techniques for data analysis—provide an opportunity to monitor water quanti
Authors
Daniel J. Sullivan, John K. Joiner, Kerry A. Caslow, Mark N. Landers, Brian A. Pellerin, Patrick P. Rasmussen, Rodney A. Sheets

Nitrogen cycling in large temperate floodplain rivers of contrasting nutrient regimes and management

Hydraulic connection between channels and floodplains (“connectivity”) is a fundamental determinant of ecosystem function in large floodplain rivers. Factors controlling material processing in these rivers depend not only on the degree of connectivity but also on the sediment conditions, nutrient loads, and source. Nutrient cycling in the nutrient‐rich upper Mississippi River (MISS) is relatively
Authors
William B. Richardson, Lynn A. Bartsch, Michelle Bartsch, Richard L. Kiesling, Brenda Mroska-LaFrancois

Reexamining the frequency range of hearing in silver (Hypophthalmichthys molitrix) and bighead (H. nobilis) carp

Silver (Hypophthalmichthys molitrix) and bighead (H. nobilis) carp (collectively bigheaded carp) are invasive fish that threaten aquatic ecosystems in the upper Midwest United States and the Laurentian Great Lakes. Controlling bigheaded carp is a priority of fisheries managers and one area of focus involves developing acoustic deterrents to prevent upstream migration. For an acoustic deterrent to
Authors
Brooke J. Vetter, Marybeth K. Brey, Allen F. Meninger