Publications

Many pathogens interact and evolve in communities where more than one host species is present, yet our understanding of host–pathogen specialization is mostly informed by laboratory studies with single species. Managing diseases in the wild, however, requires understanding how host–pathogen specialization affects hosts in diverse communities. Juvenile salmonid mortality in hatcheries caused by inf

Bio-physical models are a useful tool for understanding dispersal and transmission of marine pathogens. While utilized for larval dispersal models, they are only recently being used in epidemiological studies and are currently underutilized by the marine epidemiology field. Bio-physical models are useful for spatial planning and coastal management. For example, they have been used for spatial pla

Unsustainably high mortality within the first 2 years of life prevents endangered Lost River Suckers Deltistes luxatus in Upper Klamath Lake, Oregon, from recruiting to spawning populations. Massive blooms of the cyanobacterium Aphanizomenon flos‐aquae and their subsequent death and decay in the lake (bloom‐crashes) are associated with high pH, low percent oxygen saturation, high total ammonia con

Pacific Lamprey (Entosphenus tridentatus) are a native anadromous species that, like salmon, historically returned to spawn in large numbers in watersheds along the west coast of the United States (U.S.). Lamprey play a vital role in river ecosystems and are one of the oldest vertebrates that have persisted over time likely influencing the evolution of many aquatic species. Pacific Lamprey have de

Endemic species face a variety of threats including predation from non‐native invaders. In some cases, however, invasive species can be managed by directly suppressing populations, and tracking technologies that allow researchers to identify movement patterns and aggregations representative of the population can facilitate suppression activities. In Yellowstone Lake (Yellowstone National Park, Wyo

Resource managers may be hesitant to make decisions based on environmental (e)DNA results alone since eDNA is an indirect method of species detection. One way to reduce the uncertainty of eDNA is to identify laboratory‐based protocols that ensure repeatable and reproducible results. We conducted a double‐blind round‐robin analysis of probe‐based assays for DNA of dreissenid (Dreissena spp.) mussel

Four species of suckers (family Catostomidae) inhabit the Klamath River Basin of Oregon and California: Lost River suckers (LRS; Deltistes luxatus), shortnose suckers (SNS; Chasmistes brevirostris), Klamath largescale suckers (KLS; Catostomus snyderi), and Klamath smallscale suckers (KSS; Catostomus rimiculus). All but Klamath smallscale suckers are endemic and restricted to the Klamath River Basi

Background Transcriptomic responses to immune stimulation were investigated in coho salmon (Oncorhynchus kisutch) with distinct growth phenotypes. Wild-type fish were contrasted to strains with accelerated growth arising either from selective breeding (i.e. domestication) or genetic modification. Such distinct routes to accelerated growth may have unique implications for relationships and/or trade

This study characterizes immunoglobulin light chain (IgL) expression and variable family usage in rainbow trout. IgL transcripts were generated by 5’ RACE from both immune and TNP-KLH immunized fish. Phylogenetic analysis revealed that the IgL variable regions clustered into seven different families: three kappa families (two newly described in this study), three sigma families, and a single lambd

The variable lymphocyte receptors (VLRs) consist of leucine rich repeats (LRRs) and comprise the humoral antibodies produced by lampreys and hagfishes. The diversity of the molecules is generated by stepwise genomic rearrangements of LRR cassettes dispersed throughout the VLRB locus. Previously, target-specific monovalent VLRB antibodies were isolated from sea lamprey larvae after immunization wit

Information on the movement patterns of fishes is essential for managers that are making critical resource decisions. We examined the frequency of a keystone species, Chinook Salmon Oncorhynchus tshawytscha that migrated from different marine basins to the Nisqually River estuary, which lies within the southernmost marine basin (hereafter, “South basin”) in Puget Sound (Washington, USA). Hatchery‐

The California Department of Water Resources (DWR) requested analysis of juvenile Chinook salmon survival in the Sacramento-San Joaquin River Delta (henceforth identified as “the Delta”) as part of an effects analysis that will be included in an Incidental Take Permit (ITP) Application. This application is in compliance with the California Endangered Species Act (CESA) and Environmental Impact Rep