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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41756

Fewer bowl traps and more hand netting can increase effective number of bee species and reduce excessive captures

Reports increasingly point to substantial declines in wild bee abundance and diversity, yet there is uncertainty about how best to measure these attributes in wild bee populations. Two commonly used methods are passive trapping with bee bowls or active netting of bees on flowers, but each of these has drawbacks. Comparing the outcomes of the two methods is complicated by their uncomparable units o
Authors
Diane L. Larson, Nora P. Pennarola, Julia B. Leone, Jennifer L. Larson

Evaluating ecosystem protection and fragmentation of the world's major mountain regions

Conserving mountains is important for protecting biodiversity because they have high beta diversity and endemicity, facilitate species movement, and provide numerous ecosystem benefits for people. Mountains are often thought to have lower levels of human modification and contain more protected area than surrounding lowlands. To examine this, we compared biogeographic attributes of the largest, con
Authors
David M. Theobald, Aerin Jacobs, Paul R. Elsen, Erik A. Beever, Libby Ehlers, Jodi Hilty

Foraging behavior and age affect maternal transfer of mercury to northern elephant seal pups

Deep ocean foraging northern elephant seals (Mirounga angustirostris) consume fish and squid in remote depths of the North Pacific Ocean. Contaminants bioaccumulated from prey are subsequently transferred by adult females to pups during gestation and lactation, linking pups to mercury contamination in mesopelagic food webs (200–1000 m depths). Maternal transfer of mercury to developing seal pups w
Authors
Sarah H. Peterson, Michael G. Peterson, Josh T. Ackerman, Cathy Debier, Chandra Goetsch, Rachel R. Holser, Luis A. Hückstädt, Jennifer C. Johnson, Theresa R. Keates, Birgitte I. McDonald, Elizabeth A. McHuron, Daniel P. Costa

Metabarcoding is (usually) more cost effective than seining or qPCR for detecting tidewater gobies and other estuarine fishes

Many studies have shown that environmental DNA (eDNA) sampling can be more sensitive than traditional sampling. For instance, past studies found a specific qPCR probe of a water sample is better than a seine for detecting the endangered northern tidewater goby, Eucyclogobius newberryi. Furthermore, a metabarcoding sample often detects more fish species than a seine detects. Less consideration has
Authors
Kevin D. Lafferty

High inter-population connectivity and occasional gene flow between subspecies improves recovery potential for the endangered Least Bell’s Vireo

Increasingly, genomic data are being used to supplement field-based ecological studies to help evaluate recovery status and trends in endangered species. We collected genomic data to address two related questions regarding the Least Bell’s Vireo (Vireo bellii), an endangered migratory songbird restricted to southern California riparian habitat for breeding. First, we sought to delineate the range
Authors
A. G. Vandergast, Barbara E. Kus, Dustin A. Wood, Anna Mitelberg, Julia G. Smith, Elizabeth R. Milano

Joint spatial modeling bridges the gap between disparate disease surveillance and population monitoring efforts informing conservation of at-risk bat species

White-Nose Syndrome (WNS) is a wildlife disease that has decimated hibernating bats since its introduction in North America in 2006. As the disease spreads westward, assessing the potentially differential impact of the disease on western bat species is an urgent conservation need. The statistical challenge is that the disease surveillance and species response monitoring data are not co-located, av
Authors
Christian Stratton, Kathryn Irvine, Katharine M. Banner, Emily S. Almberg, Daniel Bachen, Kristina Smucker

Forest fire, thinning, and flood in wildland-urban interface: UAV and lidar-based estimate of natural disaster impacts

ContextWildland-urban interface (WUI) areas are facing increased forest fire risks and extreme precipitation events due to climate change, which can lead to post-fire flood events. The city of Flagstaff in northern Arizona, USA experienced WUI forest thinning, fire, and record rainfall events, which collectively contributed to large floods and damages to the urban neighborhoods and city infrastruc
Authors
Temuulen Ts. Sankey, Lauren Tango, Julia Tatum, Joel B. Sankey

Flow cytometric assessments of metabolic activity in bacterial assemblages provide insight into ecosystem condition along the Buffalo National River, Arkansas

The Buffalo National River (BNR), on karst terrain in Arkansas, is considered an extraordinary water resource. Water collected in Spring 2017 along BNR was metagenomically analyzed using 16S rDNA, and for 17 months (5/2017–11/2018), bacterial responses were measured in relation to nutrients sampled along a stretch of BNR near a concentrated animal feed operation (CAFO) on Big Creek. Because cell c
Authors
Jill Jenkins, Rassa Dale, Nina M. Hoffpauir, Brooke A Baudoin, Caroline Matkin, Lucas Driver, Shawn W Hodges, Bonnie L. Brown

Range-wide population trend analysis for greater sage-grouse (Centrocercus urophasianus)—Updated 1960–2023

Greater sage-grouse (Centrocercus urophasianus) are at the center of state and national land-use policies largely because of their unique life-history traits as an ecological indicator for health of sagebrush ecosystems. This updated population trend analysis provides state and federal land and wildlife managers with best-available science to help guide management and conservation plans aimed at b
Authors
Brian G. Prochazka, Peter S. Coates, Cameron L. Aldridge, Michael S. O'Donnell, David R. Edmunds, Adrian P. Monroe, Steve E. Hanser, Lief A. Wiechman, Michael P. Chenaille

Local environments, not invasive hybridization, influence cardiac performance of native trout under acute thermal stress

Climate-induced expansion of invasive hybridization (breeding between invasive and native species) poses a significant threat to the persistence of many native species worldwide. In the northern U.S. Rocky Mountains, hybridization between native cutthroat trout and non-native rainbow trout has increased in recent decades due, in part, to climate-driven increases in water temperature. It has been p
Authors
Jeffrey Strait, Jared Grummer, Nicholas Hoffman, Clint C. Muhlfeld, Shawn R. Narum, Gordon Luikart

Stable isotopes reveal that foraging strategy dictates trophic response of salt marsh residents to black mangrove Avicennia germinans range expansion

Climate warming has facilitated the expansion of black mangrove Avicennia germinans (hereafter ‘Avicennia’) into smooth cordgrass Spartina alterniflora (hereafter ‘Spartina’) salt marshes in southeastern Louisiana (USA). As macrophytes contribute to soil organic matter (SOM) and primary production, this transition could alter the basal energy pathways supporting salt marsh food webs. We used bulk-
Authors
Katherine B. Loesser, Christina E. Powell, Brandeus Davis, Melissa Millman Baustian, Michael J. Polito

Wildfire burn severity and stream chemistry influence aquatic invertebrate and riparian avian mercury exposure in forested ecosystems

Terrestrial soils in forested landscapes represent some of the largest mercury (Hg) reserves globally. Wildfire can alter the storage and distribution of terrestrial-bound Hg via reemission to the atmosphere or mobilization in watersheds where it may become available for methylation and uptake into food webs. Using data associated with the 2007 Moonlight and Antelope Fires in California, we examin
Authors
Garth Herring, Lora B. Tennant, James Willacker, Matthew Johnson, Rodney B. Siegel, Julie S. Polasik, Collin Eagles-Smith