Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 41894
Testing a generalizable machine learning workflow for aquatic invasive species on Rainbow Trout (Oncorhynchus mykiss) in northwest Montana
Biological invasions are accelerating worldwide, causing major ecological and economic impacts in aquatic ecosystems. The urgent decision-making needs of invasive species managers can be better met by the integration of biodiversity big data with large-domain models and data-driven products. Remotely sensed data products can be combined with existing invasive species occurrence data via machine le
Authors
Sean C. Carter, Charles B. van Rees, Brian K. Hand, Clint C. Muhlfeld, Gordon Luikart, John S Kimball
Acute mortality in California tiger salamander (Ambystoma californiense) and Santa Cruz long-toed salamander (Ambystoma macrodactylum croceum) caused by Ribeiroia ondatrae (Class: Trematoda)
In early September 2019, a morbidity and mortality event affecting California tiger salamanders (Ambystoma californiense) and Santa Cruz long-toed salamanders (Ambystoma macrodactylum croceum) in late stages of metamorphosis was reported at a National Wildlife Refuge in Santa Cruz County, California, U.S.A. During the postmortem disease investigation, severe integumentary metacercarial (Class: Tre
Authors
Saskia Keller, Constance Roderick, Christopher Caris, Daniel A. Grear, Rebecca A. Cole
The effects of ENSO and the North American monsoon on mast seeding in two Rocky Mountain conifer species
We aimed to disentangle the patterns of synchronous and variable cone production (i.e. masting) and its relationship to climate in two conifer species native to dry forests of western North America. We used cone abscission scars to reconstruct ca 15 years of recent cone production in Pinus edulis and Pinus ponderosa, and used redundancy analysis to relate time series of annual cone production to c
Authors
Andreas Wion, Ian Pearse, Kyle C. Rodman, Thomas T. Veblen, Miranda Redmond
The ecology and evolution of synchronized reproduction in long-lived plants
Populations of many long-lived plants exhibit spatially synchronized seed production that varies extensively over time, so that seed production in some years is much higher than on average, while in others, it is much lower or absent. This phenomenon termed masting or mast seeding has important consequences for plant reproductive success, ecosystem dynamics and plant–human interactions. Inspired b
Authors
Mario B. Pesendorfer, Davide Ascoli, Michal Bogdziewicz, Andrew Hacket-Pain, Ian Pearse, Giorgio Vacchiano
Modes of climate variability bridge proximate and evolutionary mechanisms of masting
There is evidence that variable and synchronous reproduction in seed plants (masting) correlates to modes of climate variability, e.g. El Niño Southern Oscillation and North Atlantic Oscillation. In this perspective, we explore the breadth of knowledge on how climate modes control reproduction in major masting species throughout Earth's biomes. We posit that intrinsic properties of climate modes (
Authors
Davide Ascoli, Andrew Hacket-Pain, Ian Pearse, Giorgio Vacchiano, Susanna Corti, Paolo Davini
Understanding mast seeding for conservation and land management
Masting, the intermittent and synchronous production of large seed crops, can have profound consequences for plant populations and the food webs that are built on their seeds. For centuries, people have recorded mast crops because of their importance in managing wildlife populations. In the past 30 years, we have begun to recognize the importance of masting in conserving and managing many other as
Authors
Ian Pearse, Andreas Wion, Angela Gonzalez, Mario B. Pesendorfer
Effects of hydrologic variability and remedial actions on first flush and metal loading from streams draining the Silverton caldera, 1992–2014
This study examined water quality in the upper Animas River watershed, a mined watershed that gained notoriety following the 2015 Gold King mine release of acid mine drainage to downstream communities. Water-quality data were used to evaluate trends in metal concentrations and loads over a two-decade period. Selected sites included three sites on tributary streams and one main-stem site on the Ani
Authors
Tanya N Petach, Robert L. Runkel, Rory M. Cowie, Diane M. McKnight
Similarities and differences between two deadly Caribbean coral diseases: White plague and stony coral tissue loss disease
For several decades, white plagues (WPDs: WPD-I, II and III) and more recently, stony coral tissue loss disease (SCTLD) have significantly impacted Caribbean corals. These diseases are often difficult to separate in the field as they produce similar gross signs. Here we aimed to compare what we know about WPD and SCTLD in terms of: (1) pathology, (2) etiology, and (3) epizootiology. We reviewed ov
Authors
Aldo Cróquer, Ernesto Weil, Caroline Rogers
Limited co-existence of native unionids and invasive dreissenid mussels more than 30 Y post dreissenid invasion in a large river system
There are serious concerns for native freshwater mussel survival (Bivalvia: Unionidae) in the Laurentian Great Lakes region after populations were seemingly pushed to the brink of extirpation following the introduction of dreissenid mussels (Dreissena polymorpha and D. rostriformis bugensis) in the mid-1980s. The Detroit River was the first major river system in North America to be invaded by drei
Authors
S. Keretz, D. Woolnough, Edward F. Roseman, T.J. Morris, A. Elgin, D.T. Zanatta
A new approach for representing agent-environment feedbacks: Coupled agent-based and state-and-transition simulation models
ContextAgent-based models (ABMs) and state-and-transition simulation models (STSMs) have proven useful for understanding processes underlying social-ecological systems and evaluating practical questions about how systems might respond to different scenarios. ABMs can simulate a variety of agents (autonomous units, such as wildlife or people); agent characteristics, decision-making, adaptive behavi
Authors
Brian W. Miller, Leonardo Frid
Can the impact of canopy trees on soil and understory be altered using litter additions?
Trees can have large effects on soil nutrients in ways that alter succession, particularly in the case of nitrogen-(N)-fixing trees. In Hawaiʻi, forest restoration relies heavily on use of a native N-fixing tree, Acacia koa (koa), but this species increases soil-available N and likely facilitates competitive dominance of exotic pasture grasses. In contrast, Metrosideros polymorpha (‘ōhi‘a), the do
Authors
Stephanie G. Yelenik, Evan M Rehm, Carla M. D'Antonio
Central-West Siberian-breeding Bar-tailed Godwits (Limosa lapponica) segregate in two morphologically distinct flyway populations
Long-distance migratory species often include multiple breeding populations, with distinct migration routes, wintering areas and annual-cycle timing. Detailed knowledge on population structure and migratory connectivity provides the basis for studies on the evolution of migration strategies and for species conservation. Currently, five subspecies of Bar-tailed Godwits Limosa lapponica have been de
Authors
Roeland A. Bom, Jesse R. Conklin, Yvonne I. Verkuil, José A. Alves, Jimmy De Fouw, Anne Dekinga, Chris J. Hassell, Raymond H. G. Klaassen, Eldar Rakhimberdiev, Andy Y. Kwarteng, Afonso Rocha, Job ten Horn, T. Lee Tibbitts, Pavel S. Tomkovich, Reginald Victor, Theunis Piersma