Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 41894
An experimental evaluation of the efficacy of imaging flow cytometry (FlowCam) for detecting invasive Dreissened and Corbiculid bivalve veligers
Zebra (Dreissena polymorpha) and quagga (D. bugensis) mussels, first introduced from central Asia into the Great Lakes of North America in the late 1980s, have crossed the continental divide and more recently spread across western North America. At the same time, several new technologies have been developed for the early detection of dreissenids, including the FlowCam, a digital imaging-in-flow in
Authors
Whitney Hassett, Julie Zimmerman, Gretchen Rollwagen-Bollens, Stephen M. Bollens, Timothy D. Counihan
Nonlinear shifts in infectious rust disease due to climate change
Range shifts of infectious plant disease are expected under climate change. As plant diseases move, emergent abiotic-biotic interactions are predicted to modify their distributions, leading to unexpected changes in disease risk. Evidence of these complex range shifts due to climate change, however, remains largely speculative. Here, we combine a long-term study of the infectious tree disease, whit
Authors
Joan Dudney, Claire Willing, Adrian Das, Andrew M. Latimer, Jonathan C B Nesmith, John J. Battles
Thyroid disruption and oxidative stress in American kestrels following embryonic exposure to the alternative flame retardants, EHTBB and TBPH
Brominated flame retardant chemicals, such as 2-ethylhexyl-2,3,4,5-tetrabromobenzoate (EHTBB) (CAS #: 183658–27-7) and bis(2-ethylhexyl)-2,3,4,5-tetrabromophthalate (TBPH) (CAS #: 26040–51-7), have been detected in avian tissues and eggs from remote regions. Exposure to EHTBB and TBPH has been shown to cause oxidative stress and altered thyroid function in rodents and fish, yet no controlled studi
Authors
CHristopher Goodchild, Natalie K. Karouna-Renier, Paula F. P. Henry, Robert J. Letcher, Sandra L. Schultz, Catherine M. Maddox, Thomas Bean, Lisa E. Peters, Vince P. Palace, Kimberly J. Fernie
Trade-offs in initial and long-term handling efficiency of PIT-tag and photographic identification methods
Individual identification is required for long-term investigations that examine population-level changes in survival or abundance, and mechanisms associated with these changes in wild populations. Such identification generally requires the application of a unique mark, or the documentation of characteristics distinctive to each individual animal. To minimize impacts to often declining populations,
Authors
Lindsey Roberts, Abigail B. Fueka, Erin L. Muths, Bennett Hardy, Larissa L. Bailey
Is there tree senescence? The fecundity evidence
Despite its importance for forest regeneration, food webs, and human economies, changes in tree fecundity with tree size and age remain largely unknown. The allometric increase with tree diameter assumed in ecological models would substantially overestimate seed contributions from large trees if fecundity eventually declines with size. Current estimates are dominated by overrepresentation of small
Authors
Tong Qiu, Marie-Claire Aavena Acuna, Robert A. Andrus, Davide Ascoli, Yves Bergeron, Roberta Berretti, Michal Bogdziewicz, Thomas Boivin, Raul Bonal, Thomas Caignard, Rafael Calama, Julio Camarero, Connie Clark, Benoit Courbaud, Sylvain Delzon, Sergio Donoso Calderon, William Farfan-Rios, Catherine A. Gehring, Gregory S. Gilbert, Cathryn H. Greenberg, Qinfeng Guo, Janneke Hille Ris Lambers, Hoshi Hoshizaki, Ines Ibanez, Valentin Journee, Christopher L. Kilner, Richard Kobe, WD Koenig, Georges Kunstler, Jalene M. LaMontagne, Mateusz Ledwon, James A. Lutz, Renzo Motta, Jonathan A. Myers, Thomas A. Nagel, Kyotaro Noguchi, Chase Nunez, Ian Pearse, Carlos Perez-Izquierdo, Lukasz Piechnik, John Poulson, Renata Poulton-Kamakura, Miranda Redmond, Chantal D. Reid, Kyle C. Rodman, C. Lane Scher, Harald Schmidt Van Marle, Barbara Seget, Shubhi Sharma, Miles Silman, Jennifer J. Swenson, Margaret Swift, Maria Uriarte, Giorgio Vacchiano, Renato Valencia, Andrew Vander Yacht, Thomas T. Veblen, Amy V. Whipple, Thomas G. Whitham, Andreas Wion, Joseph Wright, Kai Zhu, Jess K. Zimmerman, Magdalena Zywiec, James S. Clark
Novel microbiome dominated by Arcobacter during anoxic excurrent flow from an ocean blue hole in Andros Island, The Bahamas
Andros Island, The Bahamas, composed of porous carbonate rock, has about 175 inland blue holes and over 50 known submerged ocean caves along its eastern barrier reef. These ocean blue holes can have both vertical and horizontal zones that penetrate under the island. Tidal forces drive water flow in and out of these caves. King Kong Cavern has a vertical collapse zone and a deep penetration under A
Authors
Deborah D. Iwanowicz, Robert B Jonas, William B. Schill, Kay Marano-Briggs
Distribution and abundance of Southwestern Willow Flycatchers (Empidonax traillii extimus) on the upper San Luis Rey River, San Diego County, California—2020 data summary
We surveyed for Southwestern Willow Flycatchers (Empidonax traillii extimus; flycatcher) along the upper San Luis Rey River, near Lake Henshaw, in Santa Ysabel, California, in 2020. Surveys were completed at four locations: three downstream from Lake Henshaw, where nest monitoring occurred from 2015 to 2019 (Rey River Ranch [RRR], Cleveland National Forest [CNF], Vista Irrigation District [VID]),
Authors
Scarlett L. Howell, Barbara E. Kus
Identifying the ecological and management implications of mangrove migration in the northern Gulf of Mexico
Climate change is transforming ecosystems and affecting ecosystem goods and services. Along the Gulf of Mexico and Atlantic coasts of the southeastern United States, the frequency and intensity of extreme freeze events greatly influences whether coastal wetlands are dominated by freeze-sensitive woody plants (mangrove forests) or freeze-tolerant grass-like plants (salt marshes). In response to war
Authors
Michael Osland
Physiological and nutritional constraints on zooplankton productivity due to eutrophication and climate change predicted using a resource-based modeling approach
Emerging evidence suggests that zooplankton production is affected by physiological and nutritional constraints due to climate change and eutrophication, which in turn could have broad implications for food-web dynamics and fisheries production. In this study, we developed a resource-based zooplankton production dynamics model that causally links freshwater cladoceran and copepod daily production-
Authors
Chen Zhang, Michael T. Brett, Jens M Nielsen, George B Arhonditsis, Ashley P Ballantyne, Jackie L Carter, Jacob Kann, Dörthe C Müller-Navarra, Daniel E. Schindler, Jason D. Stockwell, Monika Winder, David Beauchamp
Disruption of the Francisella noatunensis orientalis pdpA gene results in virulence attenuation and protection in zebrafish
Several Francisella spp. including F. noatunensis are regarded as important emerging pathogens of wild and farmed fish. However, very few studies have investigated the virulence factors that allow these bacterial species to be pathogenic in fish. The Francisella Pathogenicity Island (FPI) is a well-described, gene-dense region encoding major virulence factors for the genus Francisella. PdpA is a m
Authors
John Hansen, Karina Ray, Po-Jui Chen, Susan Yun, Diane G. Elliott, Carla M. Conway, Michael Culcutt, Maureen K. Purcell, Timothy J Welch, John Patrick Bellah, Ellie Maureen Dalsky, Justin Blaine Greer, Esteban Soto
Amphibian population responses to mitigation: Relative importance of wetland age and design
Wetland creation is a common practice to mitigate for the loss of natural wetlands. However, there is still uncertainty about how effectively created wetlands replace habitat provided by natural wetlands. This uncertainty is due in part because post-construction monitoring of biological communities, and vertebrates especially, is rare and typically short-term (<5 years). We estimated occupancy of
Authors
Emily Bea Oja, Leah S Swartz, Erin L. Muths, Blake R. Hossack
Large California wildfires: 2020 fires in historical context
BackgroundCalifornia in the year 2020 experienced a record breaking number of large fires. Here, we place this and other recent years in a historical context by examining records of large fire events in the state back to 1860. Since drought is commonly associated with large fire events, we investigated the relationship of large fire events to droughts over this 160 years period.ResultsThis study s
Authors
Jon Keeley, Alexandra D. Syphard