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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41756

Hirsutonosema embarrassi n. gen. n. sp. (Phylum Microsporidia) in the Ovary of Mucket (Actinonaias ligamentina), Plain Pocketbook (Lampsilis cardium), and Fatmucket (Lampsilis siliquoidea) (Unionidae) from the Embarrass River, Wisconsin, USA

During an epidemiological survey following a mortality event of freshwater mussels in 2018 in the Embarrass River, Wisconsin, USA, we identified a novel microsporidian parasite in the ovaries of mucket (Actinonaias ligamentina), plain pocketbook (Lampsilis cardium), and fatmucket (Lampsilis siliquoidea) (Unionidae). Histopathology showed round-to-oval microsporidian spores in the cytoplasm of oocy
Authors
Susan Knowles, Eric M. Leis, J.C. Richard, I.F. Standish, Jamie Bojko, Jesse Weinzinger, Diane L. Waller

Fish invasion of prairie pothole wetlands reduces amphipod abundance, a key vertebrate forage

Fishes have spread into previously fishless wetlands, likely affecting other species. In the Prairie Pothole Region of North America, the invasion of fish into wetlands is facilitated by interactions of altered land use, climate, and hydrology. We aimed to understand the effects of fishes on amphipods, which are macroinvertebrates that vertebrates rely on as forage. We hypothesized the presence an
Authors
Jake D. Carleen, Danelle M. Larson, Michael J. Anteau, Megan J. Fitzpatrick, Andrew W. Hafs, Carl W. Isaacson, Breanna R. Keith

Climate-influenced phenology of larval fish transport in a large lake

Elucidating physical transport phenologies in large lakes can aid understanding of larval recruitment dynamics. Here, we integrate a series of climate, hydrodynamic, biogeochemical, and Lagrangian particle dispersion models to: (1) simulate hatch and transport of fish larvae throughout an illustrative large lake, (2) evaluate patterns of historic and potential future climate-induced larval transpo
Authors
Spencer T. Gardner, Mark D. Rowe, Pengfei Xue, Xing Zhou, Peter Alsip, David Bunnell, Paris D. Collingsworth, Edward S. Rutherford, Tomas O. Hook

Bird community response to one decade of riparian restoration along the Colorado River delta in Mexico

We assessed the response of breeding birds to one decade of riparian restoration in the Colorado River delta including active vegetation management since 2010 and various environmental water deliveries since 2014. Bird surveys were conducted from 2002 to 2021 at 230 bird count stations distributed along five river reaches with different hydrogeomorphic characteristics, across 7 routes in actively
Authors
Eduardo Gonzalez-Sargas, Timothy D Meehan, Osvel Hinojosa-Huerta, Steffany Villagomez-Palma, Alejandra Calvo-Fonseca, Christopher Dodge, Martha Gomez-Sapiens, Patrick B. Shafroth

Change in growth and prey utilization for a native salmonid following invasion by an omnivorous minnow in an oligotrophic reservoir

Aquatic invasive species can affect food web structure, native fish growth, and production, depending on the traits of the invasive species and the pre-invasion conditions of the ecosystem. Thermal tolerances and behavioral traits can further influence differential exploitation of resources shared between native and invasive species. An unauthorized introduction of redside shiner (Richardsonius ba
Authors
Rachelle Carina Johnson, Tessa Julianne Code, Karl D. Stenberg, Jonathan H Mclean, Benjamin Lorenz Jensen, Marshal Hoy, David Beauchamp

Projected sea-level rise and high tide flooding at Timucuan Ecological and Historic Preserve, Florida

IntroductionNational parks and preserves in the South Atlantic-Gulf Region contain valuable coastal habitats such as tidal wetlands and mangrove forests, as well as irreplaceable historic buildings and archeological sites located in low-lying areas. These natural and cultural resources are vulnerable to accelerated sea-level rise and escalating high tide flooding events. Through a Natural Resource
Authors
Hana R. Thurman, Nicholas M. Enwright, Michael J. Osland, Davina L. Passeri, Richard H. Day, Bethanie M. Simons

Development of high surface area organosilicate nanoparticulate thin films for use in sensing hydrophobic compounds in sediment and water

The scope of this study was to apply advances in materials science, specifically the use of organosilicate nanoparticles as a high surface area platform for passive sampling of chemicals or pre-concentration for active sensing in multiple-phase complex environmental media. We have developed a novel nanoporous organosilicate (NPO) film as an extraction phase and proof of concept for application in
Authors
Sangho Bok, Venumadhav R. Korampally, Jacob K. Stanley, Keshab Gangopadhyay, Shubhra Gangopadhyay, Jeffery Steevens

Avian communities respond to plant and landscape composition in actively revegetated floodplains of the Colorado River delta in Mexico

We examined the influence of local habitat factors such as plant community composition and species cover, and landscape habitat factors (e.g., land cover types) on the composition of the avian community in an arid-region large river delta (Colorado River). This 106 river km-long study area has experienced restoration through environmental water deliveries and active management of vegetation for ca
Authors
Eduardo Gonzalez-Sargas, Martha Gomez-Sapiens, Osvel Hinojosa-Huera, Steffany Villagomez-Palma, Alejandra Calvo-Fonseca, Joanna Grand, Timothy D. Meehan, Christopher Dodge, Pamela L. Nagler, Carlos Restrepo-Giraldo, Carlos Nieblas, Angela Melendez, Roberto Real Rangel, Patrick B. Shafroth

Enhancing assessments of coastal wetland migration potential with sea-level rise: Accounting for uncertainty in elevation data, tidal data, and future water levels

Sea-level rise rates are predicted to surpass rates of wetland vertical adjustment in the coming decades in many areas, increasing the potential for wetland submergence. Information on where wetland migration is possible can help natural resource managers for planning land acquisition or enhancing habitat connectivity to bolster adaptation of coastal wetlands to rising seas. Elevation-based models
Authors
Nicholas Enwright, Michael Osland, Hana R. Thurman, Claire E. McHenry, William C. Vervaeke, Brett Patton, Davina Passeri, Jason M. Stoker, Richard Day, Bethanie M. Simons

Restoring Pacific Lamprey in the Umpqua River Basin of Oregon: A workshop summary

The Umpqua River Basin in southwestern Oregon (Figure 1) is part of the lands inhabited by the Cow Creek Band of Umpqua Tribe of Indians and an area of active co-management authority. This Basin supports a unique fish fauna, including important populations of Pacific salmon (Oncorhynchus spp.) and steelhead (O. mykiss), and other native fishes that are endemic to the region (Mims et al. 2018). Amo
Authors
Jason B. Dunham, Krista Jones, Kelly C. Coates, Travis Mackie

How much trapping effort is needed for early detection of European green crab?

We present a case study using trapping data and species accumulation theory to assess the sampling effort needed to detect species that are rare in habitats sampled as part of the management of invasive European green crab Carcinus maenas on the coast of Washington State and Salish Sea shorelines, such as is desired for early detection of invasive species. In response to detections of green crab o
Authors
Timothy D. Counihan, Theresa Thom

Applying local and global sensitivity analysis to inform bigheaded carp management

Natural resource managers commonly use population-level models to aid in understanding the status of target populations or the potential implications of management actions. Sensitivity analyses, specifically, local sensitivity analysis (LSA) and global sensitivity analysis (GSA), exist as tools to improve understanding of these models, the importance of specific parameters to model outcomes, and t
Authors
Richard A. Erickson, Benjamin J. Marcek, Hannah Mann Thompson, Brian Schoenung, John M. Dettmers, Michael N. Fienen