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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 42168

Predicting attenuation of salinized surface- and groundwater-resources from legacy energy development in the Prairie Pothole Region

Oil and gas (energy) development in the Williston Basin, which partly underlies the Prairie Pothole Region in central North America, has helped meet U.S. energy demand for decades. Historical handling and disposal practices of saline wastewater co-produced during energy development resulted in salinization of surface and groundwater at numerous legacy energy sites. Thirty years of...
Authors
Todd M. Preston, Chauncey W. Anderson, Joanna Thamke, Blake Hossack, Katherine Skalak, Isabelle M. Cozzarelli

Plague positive mouse fleas on mice prior to plague outbreaks in black-tailed and white-tailed prairie dogs

Plague is a lethal zoonotic disease associated with rodents worldwide. In the western United States, plague outbreaks can decimate prairie dog (Cynomys spp.) colonies. However, it is unclear where the causative agent, Yersinia pestis, of this flea-borne disease is maintained between outbreaks, and what triggers plague-induced prairie dog die-offs. Less susceptible rodent hosts, such as...
Authors
Gebbiena M. Bron, Carly Marie Malave, Jesse T. Boulerice, Jorge E. Osorio, Tonie E. Rocke

First record of the non-indigenous parasitic copepod Neoergasilus japonicus (Harada, 1950) in the Lake Ontario Watershed: Oneida Lake, New York

Four specimens of the Asiatic parasitic copepod Neoergasilus japonicus (Harada, 1930) were collected from Oneida Lake, New York in September 2018; one specimen was from a white sucker Catostomus commersonii, another from a green sunfish Lepomis cyanellus, and two from a bluegill Lepomis macrochirus. The four adult female specimens were found attached to the base of the gills of their...
Authors
Chris C. Marshall, Patrick L. Hudson, J. Randy Jackson, Joe K. Connolly, Jim M Watkins, Lars G. Rudstam

Integrating behavior and physiology into strategies for amphibian conservation

The amphibian decline crisis has been challenging to address because of the complexity of factors—and their multitude of interactive effects—that drive this global issue. Dissecting such complexity could benefit from strategies that integrate multiple disciplines and address the mechanistic underpinnings of population declines and extirpations. We examine how the disciplines of behavior...
Authors
Susan C. Walls, Caitlin S. Gabor

Establishing genome sizes of focal fishery and aquaculture species along Baja California, Mexico

Genome size—the total haploid content of nuclear DNA— is constant in all cells in individuals within a species, but differs among species. Consequently, the genome size is a quantifiable genetic signature that not only characterizes a species, but it can reflect chromatin modifications, which play fundamental roles in most biological processes that are involved in the manipulation and...
Authors
Constanza del Mar Ochoa-Saloma, Jill A. Jenkins, Manuel A. Segovia, Miguel A. Del Rio-Portilla, Carmen G. Paniagua-Chavez

Carbon dioxide emissions and methane flux from forested wetland soils of the Great Dismal Swamp, USA

The Great Dismal Swamp, a freshwater forested peatland, has accumulated massive amounts of soil carbon since the postglacial period. Logging and draining have severely altered the hydrology and forest composition, leading to drier soils, accelerated oxidation, and vulnerability to disturbance. The once dominant Atlantic white cedar, cypress, and pocosin forest types are now fragmented...
Authors
Laurel Gutenberg, Ken W. Krauss, John J. Qu, Changwoo Ahn, Dianna M. Hogan, Zhiliang Zhu, Chenyang, Xu

Shorebird subsistence harvest and indigenous knowledge in Alaska: Informing harvest assessment and management, and engaging users in shorebird conservation

Limited data on harvest and population parameters are major impediments to assess shorebird harvest sustainability. Because of sharp declines in shorebird populations, timely conservation efforts require approaches that account for uncertainty in harvest sustainability. We combined harvest assessment and ethnographic research to better understand shorebird conservation concerns related...
Authors
Naves. Liliana, Jacqueline Keating, T. Lee Tibbitts, Daniel R. Ruthrauff

Improved detection of rare, endangered and invasive trout using a new large-volume sampling method for eDNA capture

Environmental DNA (eDNA) detection probability increases with volume of water sampled. Common approaches for collecting eDNA samples often require many samples since these approaches usually use fine filters, which restrict the volume of water that can be sampled. An alternative to collecting many, small volume water samples using fine filters may be to collect fewer, large volume water...
Authors
Adam Sepulveda, Jenna Schabacker, Seth Smith, Robert K. Al-Chokhachy, Gordon Luikart, Stephen J. Amish

Densities, diets, and growth rates of larval Alewife and Bloater in a changing Lake Michigan ecosystem.

Variability in abiotic and biotic factors during larval stages has profound impacts on fish recruitment. In Lake Michigan, where the composition of lower trophic levels has undergone considerable changes in the past decade, managers are concerned that fish recruitment could be negatively affected. We hypothesized that spatial variation in Lake Michigan larval fish density and growth can...
Authors
Drew Elliot Eppehimer, David Bunnell, Patricia M Dieter, David M. Warner, Lauren A. Eaton, David J Wells, Edward S. Rutherford

The evolving threat of rapid Ohia death (ROD) to Hawaii’s native ecosystems and rare plant species

Hawai‘i’s most widespread native tree, ‘ōhi‘a lehua (Metrosideros polymorpha), has been dying across large areas of Hawai‘i Island mainly due to two fungal pathogens (Ceratocystis lukuohia and Ceratocystis huliohia) that cause a disease collectively known as Rapid ‘Ōhi‘a Death (ROD). Here we examine patterns of positive detections of C. lukuohia as it has been linked to the larger...
Authors
Lucas B. Fortini, Lauren R. Kaiser, Lisa M. Keith, Jonathan P. Price, R. M. Hughes, James D. Jacobi, J. B. Friday

Review: Endophytic microbes and their potential applications in crop management

Endophytes are microbes (mostly bacteria and fungi) present in plants. Endophytic microbes are often functional in that they may carry nutrients from the soil into plants, modulate plant development, increase stress tolerance of plants, suppress virulence in pathogens, increase disease resistance in plants, and suppress development of competitor plant species. Endophytic microbes have...
Authors
James White, Kathryn L. Kingsley, Matthew T. Elmore, Satish Kumar Verma, Surendra K Gond, Kurt P. Kowalski

Subsurface water piping prevents meromixis in a deep volcanic crater lake (Dominica, West Indies)

Boeri Lake—a small (3.6 ha) but deep (39.6 m) crater lake on Morne Micotrin in Dominica, West Indies—presents a limnological enigma; it exhibits strong morphometric and circumstantial evidence for meromixis, yet it is not stratified. We tested the hypothesis that water seepage from Boeri Lake overcomes morphometric drivers of stratification and prevents the onset of meromixis. We...
Authors
Bryan M. Maitland, Brian O'Malley, Donald J. Stewart
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