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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41758

Boreal conifers maintain carbon uptake with warming despite failure to track optimal temperatures

Warming shifts the thermal optimum of net photosynthesis (ToptA) to higher temperatures. However, our knowledge of this shift is mainly derived from seedlings grown in greenhouses under ambient atmospheric carbon dioxide (CO2) conditions. It is unclear whether shifts in ToptA of field-grown trees will keep pace with the temperatures predicted for the 21st century under elevated atmospheric CO2 con
Authors
Mirindi E. Dusenge, Jeffery M. Warren, Peter B. Reich, Eric Ward, Bridget K. Murphy, Artur Stefanski, Raimundo Bermudez, Marisol Cruz, David A. McLennan, Anthony W. King, Rebecca A. Montgomery, Paul J. Hanson, Danielle A. Way

Development and application of a qPCR-based genotyping assay for Ophidiomyces ophidiicola to investigate the epidemiology of ophidiomycosis

Ophidiomycosis (snake fungal disease) is an infectious disease caused by the fungus Ophidiomyces ophidiicola to which all snake species appear to be susceptible. Significant variation has been observed in clinical presentation, progression of disease, and response to treatment, which may be due to genetic variation in the causative agent. Recent phylogenetic analysis based on whole-genome sequenci
Authors
Ellen Haynes, Jeffrey M. Lorch, Matthew C. Allender

Low-complexity floodplain inundation model performs well for ecological and management applications in a large river ecosystem

Flooding is a dominant physical process that drives the form and function of river-floodplain ecosystems. Efficiently characterizing flooding dynamics can be challenging, especially over geographically broad areas or at spatial and temporal scales relevant for ecosystem management activities. Here, we empirically evaluated a low-complexity geospatial model of floodplain inundation in six study seg
Authors
Molly Van Appledorn, Nathan R. De Jager, Jason J. Rohweder

Biophysical factors control invasive annual grass hot spots in the Mojave Desert

Invasive annual grasses can promote ecosystem state changes and habitat loss in the American Southwest. Non-native annual grasses such as Bromus spp. and Schismus spp. have invaded the Mojave Desert and degraded habitat through increased fire occurrence, severity, and shifting plant community composition. Thus, it is important to identify and characterize the areas where persistent invasion has oc
Authors
Tanner Corless Smith, Tara B.B. Bishop, Michael C. Duniway, Miguel L. Villarreal, Anna C Knight, Seth M. Munson, Eric K. Waller, Ryan Jensen, Richard A. Gill

H5N1 highly pathogenic avian influenza clade 2.3.4.4b in wild and domestic birds: Introductions into the United States and reassortments, December 2021–April 2022

Highly pathogenic avian influenza viruses (HPAIVs) of the A/goose/Guangdong/1/1996 lineage H5 clade 2.3.4.4b continue to have a devastating effect on domestic and wild birds. Full genome sequence analyses using 1369 H5N1 HPAIVs detected in the United States (U.S.) in wild birds, commercial poultry, and backyard flocks from December 2021 to April 2022, showed three phylogenetically distinct H5N1 vi
Authors
Sungsu Youk, Mia Kim Torchetti, Kristina Lantz, Julianna B. Lenoch, Mary Lea Killian, Christina Leyson, Sarah N. Bevins, Krista Dilione, Hon S. Ip, David E. Stallknecht, Rebecca L. Poulson, David L. Suarez, David E. Swayne, Mary J. Pantin-Jackwood

Evidence of population-level impacts and resiliency for Gulf of Mexico shelf taxa following the Deepwater Horizon oil spill

The goal of this paper was to review the evidence of population-level impacts of the Deepwater Horizon Oil Spill (DWH) on Gulf of Mexico (GOM) continental shelf taxa, as well as evidence of resiliency following the DWH. There is considerable environmental and biological evidence that GOM shelf taxa were exposed to and suffered direct and indirect impacts of the DWH. Numerous assessments, from meso
Authors
W.F. Patterson III, K.L. Robinson, B.K. Barnett, M. Campbell, D.C. Chagaris, J. P. Chanton, K. Daly, D. Hanisko, F. Hernandez, S.A. Murawski, A.G. Pollock, D. Portnoy, Erin L. Pulster

Tool 4: Suggested communication deliverables for coproduced projects

An informational tool provided as part of a toolkit for researchers and practitioners with an interest in coproducing actionable science to support public land management
Authors
Lea B. Selby, Sarah K. Carter, Travis Haby, D. J. A. Wood, Aparna Bamzai-Dodson, Patrick J. Anderson, Jeffrey E. Herrick, Ella M. Samuel, John C. Tull

Tool 5: A Problem-solving checklist for coproduction

An informational tool provided as part of a toolkit for researchers and practitioners with an interest in coproducing actionable science to support public land management
Authors
Lea B. Selby, Sarah K. Carter, Travis Haby, D. J. A. Wood, Aparna Bamzai-Dodson, Patrick J. Anderson, Jeffrey E. Herrick, Ella M. Samuel, John C. Tull

Tool 1: Coproduction in the public lands context

An informational tool provided as part of a toolkit for researchers and practitioners with an interest in coproducing actionable science to support public land management
Authors
Lea B. Selby, Sarah K. Carter, Travis Haby, D. J. A. Wood, Aparna Bamzai-Dodson, Patrick J. Anderson, Jeffrey E. Herrick, Ella M. Samuel, John C. Tull

Tool 2: What level of coproduction makes sense for my project

An informational tool provided as part of a toolkit for researchers and practitioners with an interest in coproducing actionable science to support public land management
Authors
Lea B. Selby, Sarah K. Carter, Travis Haby, D. J. A. Wood, Aparna Bamzai-Dodson, Patrick J. Anderson, Jeffrey E. Herrick, Ella M. Samuel, John C. Tull

Illegal shooting is now a leading cause of death of birds along power lines in the western USA

Human actions, both legal and illegal, affect wildlife in many ways. Inaccurate diagnosis of cause of death undermines law enforcement, management, threat assessment, and mitigation. We found 410 dead birds collected along 196 km of power lines in four western USA states during 2019 – 2022. We necropsied these carcasses to test conventional wisdom suggesting that electrocution is the leading cause
Authors
Eve C. Thomason, Natalie J.S. Turley, James R. Belthoff, Tara Conkling, Todd E. Katzner

Tool 3: Suggested coproduction steps and practices

An information sheet provided as part of a toolkit for researchers and practitioners with an interest in coproducing actionable science to support public land management
Authors
Lea B. Selby, Sarah K. Carter, Travis Haby, D. J. A. Wood, Aparna Bamzai-Dodson, Patrick J. Anderson, Jeffrey E. Herrick, Ella Samuel, John C. Tull