Publications
This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.
Filter Total Items: 41778
Habitat-specific foraging by striped bass (Morone saxatilis) in the San Francisco Estuary, California: Implications for tidal restoration
Non-native predatory fish strongly impact aquatic communities, and their impacts can be exacerbated by anthropogenic habitat alterations. Loss of natural habitat and restoration actions reversing habitat loss can modify relationships between non-native predators and prey. Predicting how these relationships will change is often difficult because insufficient information exists on the habitat-specif
Authors
Matthew J. Young, Frederick V. Feyrer, Collin Smith, Dennis A. Valentine
Haploid gynogens facilitate disomic marker development in paleotetraploid sturgeons
Acipenseriformes (sturgeons and paddlefishes) are of substantial conservation concern, and development of genomic resources for these species is difficult due to past whole genome duplication. Development of disomic markers for polyploid organisms can be challenging due to difficulty in resolving alleles at a single locus from those among duplicated loci. In this study, we detail the development o
Authors
Richard Jr Flamio, Dominic G Swift, David S Portnoy, Kimberly Chojnacki, Aaron J. Delonay, Jeffrey Powell, Patrick Braaten, Edward J. Heist
Endangered Cape Sable seaside sparrow ecology: Actions towards recovery through landscape-scale ecosystem restoration
Understanding the ecology of endangered taxa and the factors affecting their population growth and decline is imperative for their recovery. In the southeastern USA, the Everglades wetland ecosystem supports a high diversity of species and communities, including many endemic and imperiled taxa, such as the federally endangered Cape Sable seaside sparrow Ammospiza maritima mirabilis (CSSS). The Eve
Authors
Allison Benscoter, Stephanie Romanach
The influence of drying on the aeolian transport of river-sourced sand
Transgression and regression of water levels (stages) have impacted the evolution of aeolian landforms and sedimentary deposits throughout geologic history. We studied this phenomenon over a five-day period of reduced flow on the Colorado River in Grand Canyon National Park, AZ, USA, in March 2021. These transient low flows exposed river-channel sand deposits to the air, causing progressive desicc
Authors
Joel B. Sankey, Joshua Caster, Alan Kasprak, Helen C. Fairley
Understanding local adaptation to prepare populations for climate change
Adaptation within species to local environments is widespread in nature. Better understanding this local adaptation is critical to conserving biodiversity. However, conservation practices can rely on species’ trait averages or can broadly assume homogeneity across the range to inform management. Recent methodological advances for studying local adaptation provide the opportunity to fine-tune effor
Authors
Mariah H. Meek, Erik A. Beever, Soraia Barbosa, Sarah W. Fitzpatrick, Nicholas K. Fletcher, Cinnamon S. Mittan-Moreau, Brendan N. Reid, Shane C. Campbell-Staton, Nancy Green, Jessica J. Hellmann
Defining biologically relevant and hierarchically nested population units to inform wildlife management
Wildlife populations are increasingly affected by natural and anthropogenic changes that negatively alter biotic and abiotic processes at multiple spatiotemporal scales and therefore require increased wildlife management and conservation efforts. However, wildlife management boundaries frequently lack biological context and mechanisms to assess demographic data across the multiple spatiotemporal s
Authors
Michael O'Donnell, David R. Edmunds, Cameron L. Aldridge, Julie A. Heinrichs, Adrian P. Monroe, Peter S. Coates, Brian G. Prochazka, Steve E. Hanser, Lief A. Wiechman
Ingested toxicity of antimycin A to grass carp Ctenopharyngodon idella and black carp Mylopharyngodon piceus in two carriers
Toxic baits are a potential control mechanism for nuisance carps, but rotenone-based baits for grass carp Ctenopharyngodon idella have been ineffective. Failures have been attributed to the palatability of rotenone because innocuous training pellets are readily consumed prior to provision of piscicide baits. Several studies suggest antimycin A, a common alternative piscicide, typically applied dir
Authors
Patrick Kroboth, Duane Chapman, Jeffery Steevens, Curtis G. Byrd
Biofilms as potential reservoirs of stony coral tissue loss disease
Since 2014, corals throughout Florida’s Coral Reef have been plagued by an epizootic of unknown etiology, colloquially termed stony coral tissue loss disease (SCTLD). Although in Florida the movement of this waterborne coral disease has been consistent with natural transport via water currents, outbreaks in the Caribbean have been more sporadic, with infections occurring in locations inconsistent
Authors
James S. Evans, Valerie J. Paul, Christina A. Kellogg
Validation of a portable eDNA detection kit for invasive carps
Loop-mediated isothermal amplification (LAMP) is a rapid molecular detection technique that has been used as a diagnostic tool for detecting human and animal pathogens for over 20 years and is promising for detecting environmental DNA shed by invasive species. We designed a LAMP assay to detect the invasive carps, silver carp (Hypophthalmichthys molitrix), bighead carp (Hypophthalmichthys nobilis)
Authors
Stacie A. Kageyama, Matthew Regh Hoogland, Tariq Tajjioui, Theresa M. Schreier, Richard A. Erickson, Christopher M. Merkes
Impeding access to tributary spawning habitat and releasing experimental fall-timed floods increases brown trout immigration into a dam's tailwater
River ecosystems have been altered by flow regulation and species introductions. Regulated flow regimes often include releases designed to benefit certain species or restore ecosystem processes, and invasive species suppression programs may include efforts to restrict access to spawning habitat. The impacts of these management interventions are often uncertain. Here, we assess hypotheses regarding
Authors
Brian D. Healy, Charles Yackulic, Robert C. Schelly
U.S. Geological Survey Colorado River Basin Actionable and Strategic Integrated Science and Technology (ASIST)—Information Management Technology Plan
IntroductionMore than 840 publications, 575 data releases, and 330 project web pages from the U.S. Geological Survey (USGS) pertain to the Colorado River Basin. Limited interconnections between Colorado River Basin publications, data, and web pages restrict the ability to synthesize and interpret scientific resources. Currently, these pieces are spread across multiple isolated locations, internal
Authors
Eric D. Anderson, Jennifer R. Erxleben, Sharon L. Qi, Adrian P. Monroe, Katharine G. Dahm
Longitudinal analyses of catch-at-age data for reconstructing year-class strength, with an application to lake trout (Salvelinus namaycush) in the main basin of Lake Huron
We investigated using longitudinal models to reconstruct year-class strength (YCS) from catch-at-age data, with an example application to lake trout (Salvelinus namaycush) in the main basin of Lake Huron. The best model structure depended on the age range used for model implementation. The YCS trajectory from the full age range (3–30 years) was similar to the trajectory from a narrow age range tha
Authors
Ji X. He, Andrew Edgar Honsey, David F. Staples, James R. Bence, Tracy L. Claramunt