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Publications

Browse more than 160,000 publications authored by our scientists over the past 100+ year history of the USGS.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.

Filter Total Items: 171158

Frequent transitions in mating-type locus chromosomal organization in Malassezia and early steps in sexual reproduction

Fungi in the basidiomycete genus Malassezia are the most prevalent eukaryotic microbes resident on the skin of human and other warm-blooded animals and have been implicated in skin diseases and systemic disorders. Analysis of Malassezia genomes revealed that key adaptations to the skin microenvironment have a direct genomic basis, and the identification of mating/meiotic genes suggests a capacity
Authors
Marco A. Coelho, Giuseppe Ianiri, Márcia David-Palma, Bart Theelen, Rohit Goyal, Aswathy Narayanan, Jeffrey M. Lorch, Kaustuv Sanyal, Teun Boekhout, Joseph Heitman

Diving deeper into seep distribution along the Cascadia Convergent Margin, USA

Previous margin-wide studies of methane seep distribution along the Cascadia Subduction Zone indicate peaks in seep density within the landward limit of the of gas hydrate stability zone (GHSZ; ≤500 m depth), suggesting a link between current ocean warming, acceleration of hydrate dissociated, and methane emissions. This inferred connection, however, may not account for regional geologic and/or st
Authors
Jane A. Rudebusch, Nancy G. Prouty, James E. Conrad, Janet Watt, Jared W. Kluesner, Jenna C. Hill, Nathaniel C. Miller, Sally J. Watson, Jess I.T. Hillman

Waterfowl show spatiotemporal trends in influenza A H5 and H7 infections but limited taxonomic variation

Influenza A viruses in wild birds pose threats to the poultry industry, wild birds, and human health under certain conditions. Of particular importance are wild waterfowl, which are the primary reservoir of low pathogenicity influenza viruses that ultimately cause high pathogenicity outbreaks in poultry farms. Despite much work on the drivers of influenza A virus prevalence, the underlying viral s
Authors
Cody M. Kent, Sarah N. Bevins, Jennifer M. Mullinax, Jeffery D. Sullivan, Diann Prosser

Twenty-year record of salt marsh elevation dynamics in response to sea-level rise and storm-driven barrier island geomorphic processes: Fire Island, New York, USA

Twenty years of surface elevation table and marker horizon monitoring at three sites along the Fire Island (New York, USA) barrier island indicates that rates of marsh surface elevation change (Watch Hill, 4.4 mm year−1; Hospital Point, 3.5 mm year−1; Great Gun, − 0.3 mm year−1) were lower than the rate of monthly mean sea-level rise during the 2002–2022 monitoring period (5.1 mm year−1, NOAA Sand
Authors
Charles T. Roman, James C. Lynch, Donald Cahoon

An introduction to lesions and histology of scleractinian corals

Stony corals (Scleractinia) are in the Phylum Cnidaria (cnidae referring to various types of stinging cells). They may be solitary or colonial, but all secrete an external, supporting aragonite skeleton. Large, colonial members of this phylum are responsible for the accretion of coral reefs in tropical and subtropical waters that form the foundations of the most biodiverse marine ecosystems. Coral
Authors
Aine C. Hawthorn, Ilze K. Berzins, Michelle Dennis, Matti Kiupel, Alisa L. Newton, Esther C. Peters, Vicente Avila Reyes, Thierry M. Work

First observation of the ground-state electron-capture of 40K

Potassium-40 is a widespread, naturally occurring isotope whose radioactivity impacts estimated geological ages spanning billions of years, nuclear structure theory, and subatomic rare-event searches—including those for dark matter and neutrinoless double-beta decay. The decays of this long-lived isotope must be precisely known for its use as a geochronometer, and to account for its presence in lo
Authors
L. Hariasz, M. Stukel, P.C.F. Di Stefano, B.C. Rasco, K.P. Rykaczewski, N.T. Brewer, D.W. Stracener, Y. Liu, Z. Gai, C. Rouleau, J. B. Carter, J. Kostensalo, J. Suhonen, H. Davis, E.D. Lukosi, K.C. Goetz, R.K. Grzywacz, M. Mancuso, F. Petricca, A. Fijalkowska, M. Wolinska-Cichocka, J. Ninkovic, P. Lechner, R.B. Ickert, Leah E. Morgan, P.R. Renne, I. Yavin

Rare 40K decay with implications for fundamental physics and geochronology

Potassium-40 is a widespread, naturally occurring isotope whose radioactivity impacts subatomic rare-event searches, nuclear structure theory, and estimated geological ages. A predicted electron-capture decay directly to the ground state of argon-40 has never been observed. The KDK (potassium decay) collaboration reports strong evidence of this rare decay mode. A blinded analysis reveals a nonzero
Authors
M. Stukel, L. Hariasz, P.C.F. Di Stefano, B.C. Rasco, K.P. Rykaczewski, N.T. Brewer, D.W. Stracener, Y. Liu, Z. Gai, C. Rouleau, J. B. Carter, J. Kostensalo, J. Suhonen, H. Davis, E.D. Lukosi, K.C. Goetz, R.K. Grzywacz, M. Mancuso, F. Petricca, A. Fijalkowska, M. Wolinska-Cichocka, J. Ninkovic, P. Lechner, R.B. Ickert, Leah E. Morgan, P.R. Renne, I. Yavin

Ten best practices for effective phenological research

The number and diversity of phenological studies has increased rapidly in recent years. Innovative experiments, field studies, citizen science projects, and analyses of newly available historical data are contributing insights that advance our understanding of ecological and evolutionary responses to the environment, particularly climate change. However, many phenological data sets have peculiarit
Authors
Richard Primack, Amanda S. Gallinat, Elizabeth R. Ellwood, Theresa M. Crimmins, Mark D. Schwartz, Michelle Staudinger, Abraham J. Miller-Rushing

Tidal restriction likely has greater impact on the carbon sink of coastal wetland than climate warming and invasive plant

AimsCoastal salt marshes are productive ecosystems that are highly efficient carbon sinks, but there is uncertainty regarding the interactions among climate warming, plant species, and tidal restriction on C cycling.MethodsOpen-top chambers (OTCs) were deployed at two coastal wetlands in Yancheng, China, where native Phragmites australis (Phragmites) and invasive Spartina alterniflora (Spartina) w
Authors
Pan Zhou, Siyuan Ye, Liujuan Xie, Ken Krauss, Lixin Pei, Samantha K. Chapman, Hans Brix, Edward A. Laws, Hongming Yuan, Shixiong Yang, Xigui Ding, Shucheng Xie

Satellite tracking reveals use of Biscayne National Park by sea turtles tagged in multiple locations

Although historical observations date back to the 1800’s, there is little information on sea turtle occupancy within Biscayne National Park (BNP). The park is located along the Florida reef tract and is dominated by the Gulfstream, which acts as a corridor for many marine animals. Here we used satellite telemetry to determine areas of use in BNP for two species of imperiled sea turtles, loggerhead
Authors
Kristen Hart, Allison Benscoter, Haley M. Turner, Michael Cherkiss, Andrew Crowder, Jacquelyn C. Guzy, David Roche, Christopher R. Sasso, Glenn D. Goodwin, Derek A. Burkholder

Variations in climate drive behavior and survival of small desert tortoises

In the Mojave Desert, timing and amounts of precipitation profoundly affect availability of water and annual plant foods necessary for the threatened Agassiz’s desert tortoise (Gopherus agassizii) to survive, especially during prolonged droughts. As part of recovery actions to increase declining populations, we translocated 83 juvenile and young desert tortoises raised in head-start pens for 4–10
Authors
Kristin H. Berry, Jeremy S Mack, Kemp M. Anderson

Estuarine salinity extremes: Using the Coastal Salinity Index to quantify the role of droughts, floods, hurricanes, and freshwater flow alteration

In the face of accelerating climate change, advancing understanding of how extreme climatic events influence estuarine salinities can help to inform resource management. Extreme salinities driven by droughts, hurricanes, floods, and freshwater flow alterations can lead to ecological transformations in estuarine ecosystems. Here, we applied the Coastal Salinity Index (CSI; Conrads and Darby 2017) t
Authors
Laura Feher, Michael Osland, Christopher Swarzenski