Patrick Connolly, Ph.D. (Former Employee)
Science and Products
Filter Total Items: 84
Fish population and habitat analysis in Buck Creek, Washington, prior to recolonization by anadromous salmonids after the removal of Condit Dam
We assessed the physical and biotic conditions in the part of Buck Creek, Washington, potentially accessible to anadromous fishes. This creek is a major tributary to the White Salmon River upstream of Condit Dam, which was breached in October 2011. Habitat and fish populations were characterized in four stream reaches. Reach breaks were based on stream gradient, water withdrawals, and fish barrier
Authors
M. Brady Allen, Jeanette Burkhardt, Carrie Munz, Patrick J. Connolly
Monitoring of stream restoration habitat on the main stem of the Methow River, Washington, during the pre-treatment phase (October 2008-May 2012) with a progress report for activities from March 2011 to November 2011
Introduction
The U.S. Geological Survey (USGS) received a request from the Bureau of Reclamation (Reclamation) to provide monitoring and an evaluation of the effectiveness of habitat actions that Reclamation plans to implement in the Upper Columbia River basin, which includes the Methow River. This monitoring and evaluation program is to partially fulfill Reclamations part of the 2008 Biological O
Authors
Wesley T. Tibbits, Kyle D. Martens, Patrick J. Connolly
Hood River PIT-tag interrogation system efficiency study. Annual report of U.S. Geological Survey activities: November 2010-October 2011
Introduction
During summer 2010, an agreement was made between the US Geological SurveyColumbia River Research Laboratory (USGS-CRRL) and the Confederated Tribes of the Warm Springs (CTWS) to operate an experimental Passive Integrated Transponder (PIT)-tag interrogation system (PTIS) near the mouth of the Hood River for a year and provide fishdetection efficiency estimates (Bonneville Power Admini
Authors
Ian G. Jezorek, Patrick J. Connolly
Wind River watershed restoration: Annual report of U.S. Geological Survey activities November 2010 – October 2011
This report summarizes work completed by U.S. Geological Survey’s Columbia River Research Laboratory (USGS-CRRL) in the Wind River subbasin during November 2010 through October 2011 under Bonneville Power Administration (BPA) contract 40481. The primary focus of USGS activities during this contract was on tagging of juvenile steelhead Oncorhynchus mykiss with Passive Integrated Transponder (PIT) t
Authors
Ian G. Jezorek, Patrick J. Connolly, Carrie S. Munz
Movement of bull trout in the upper Jarbidge River watershed, Idaho and Nevada, 2008-09--A supplement to Open-File Report 2010-1033
We monitored bull trout (Salvelinus confluentus) in 2008 and 2009 as a continuation of our work in 2006 and 2007, which involved the tagging of 1,536 bull trout with passive integrated transponder (PIT) tags in the East Fork Jarbidge River and West Fork Jarbidge River and their tributaries in northeastern Nevada and southern Idaho. We installed PIT tag interrogation systems (PTISs) at established
Authors
Carrie S. Munz, M. Brady Allen, Patrick J. Connolly
Composition and relative abundance of fish species in the lower White Salmon River, Washington, prior to the removal of Condit Dam
Information about the composition and relative abundance of fish species was collected by a rotary screw trap and backpack electrofishing in the lower White Salmon River, Washington. The information was collected downstream of Condit Dam, which is at river kilometer (rkm) 5.2, and is proposed for removal in October 2011. A rotary screw trap was installed in the White Salmon River at rkm 1.5 and op
Authors
M. Brady Allen, Patrick J. Connolly
Big Spring spinedace and associated fish populations and habitat conditions in Condor Canyon, Meadow Valley Wash, Nevada
Executive Summary: This project was designed to document habitat conditions and populations of native and non-native fish within the 8-kilometer Condor Canyon section of Meadow Valley Wash, Nevada, with an emphasis on Big Spring spinedace (Lepidomeda mollispinis pratensis). Other native fish present were speckled dace (Rhinichthys osculus) and desert sucker (Catostomus clarki). Big Spring spinedac
Authors
Ian G. Jezorek, Patrick J. Connolly, Carrie S. Munz, Chris Dixon
Wind River watershed restoration, annual report November 2009 to October 2010.
This report summarizes work completed by U.S. Geological Survey’s Columbia River Research Laboratory (USGS-CRRL) in the Wind River subbasin during the period November 2009 through October 2010 under Bonneville Power Administration (BPA) contract 46102. Long term research in the Wind River has focused on assessments of steelhead/rainbow trout Oncorhynchus mykiss populations, interactions with intro
Authors
P.J. Connolly, I.G. Jezorek
Estimating the hatchery fraction of a natural population: a Bayesian approach
There is strong and growing interest in estimating the proportion of hatchery fish that are in a natural population (the hatchery fraction). In a sample of fish from the relevant population, some are observed to be marked, indicating their origin as hatchery fish. The observed proportion of marked fish is usually less than the actual hatchery fraction, since the observed proportion is determined b
Authors
Jarrett J. Barber, Kenneth G. Gerow, Patrick J. Connolly, Sarabdeep Singh
Sediment management strategies associated with dam removal in the State of Washington
Different removal strategies are described for dams in three diverse drainage basins (Wind River, White Salmon River, and Elwha River basins) in the State of Washington (USA). The comparisons between the strategies offer the opportunity to track the effects of sediment resulting from dam decommissioning in the Pacific Northwest and to determine possible effects on socio-economically important spec
Authors
C. S. Magirl, P.J. Connolly, B. Coffin, J.J. Duda, A.E. Draut
Distribution and movement of bull trout in the upper Jarbidge River watershed, Nevada
In 2006 and 2007, we surveyed the occurrence of bull trout (Salvelinus confluentus), the relative distributions of bull trout and redband trout (Oncorhynchus mykiss), and stream habitat conditions in the East and West Forks of the Jarbidge River in northeastern Nevada and southern Idaho. We installed passive integrated transponder (PIT) tag interrogation systems at strategic locations within the w
Authors
M. Brady Allen, Patrick J. Connolly, Matthew G. Mesa, Jodi Charrier, Chris Dixon
Guidelines for calculating and enhancing detection efficiency of PIT tag interrogation systems
With increasing use of passive integrated transponder (PIT) tags and reliance on stationary PIT tag interrogation systems to monitor fish populations, guidelines are offered to inform users how best to use limited funding and human resources to create functional systems that maximize a desired level of detection and precision. The estimators of detection efficiency and their variability as describ
Authors
Patrick J. Connolly
Science and Products
Filter Total Items: 84
Fish population and habitat analysis in Buck Creek, Washington, prior to recolonization by anadromous salmonids after the removal of Condit Dam
We assessed the physical and biotic conditions in the part of Buck Creek, Washington, potentially accessible to anadromous fishes. This creek is a major tributary to the White Salmon River upstream of Condit Dam, which was breached in October 2011. Habitat and fish populations were characterized in four stream reaches. Reach breaks were based on stream gradient, water withdrawals, and fish barrier
Authors
M. Brady Allen, Jeanette Burkhardt, Carrie Munz, Patrick J. Connolly
Monitoring of stream restoration habitat on the main stem of the Methow River, Washington, during the pre-treatment phase (October 2008-May 2012) with a progress report for activities from March 2011 to November 2011
Introduction
The U.S. Geological Survey (USGS) received a request from the Bureau of Reclamation (Reclamation) to provide monitoring and an evaluation of the effectiveness of habitat actions that Reclamation plans to implement in the Upper Columbia River basin, which includes the Methow River. This monitoring and evaluation program is to partially fulfill Reclamations part of the 2008 Biological O
Authors
Wesley T. Tibbits, Kyle D. Martens, Patrick J. Connolly
Hood River PIT-tag interrogation system efficiency study. Annual report of U.S. Geological Survey activities: November 2010-October 2011
Introduction
During summer 2010, an agreement was made between the US Geological SurveyColumbia River Research Laboratory (USGS-CRRL) and the Confederated Tribes of the Warm Springs (CTWS) to operate an experimental Passive Integrated Transponder (PIT)-tag interrogation system (PTIS) near the mouth of the Hood River for a year and provide fishdetection efficiency estimates (Bonneville Power Admini
Authors
Ian G. Jezorek, Patrick J. Connolly
Wind River watershed restoration: Annual report of U.S. Geological Survey activities November 2010 – October 2011
This report summarizes work completed by U.S. Geological Survey’s Columbia River Research Laboratory (USGS-CRRL) in the Wind River subbasin during November 2010 through October 2011 under Bonneville Power Administration (BPA) contract 40481. The primary focus of USGS activities during this contract was on tagging of juvenile steelhead Oncorhynchus mykiss with Passive Integrated Transponder (PIT) t
Authors
Ian G. Jezorek, Patrick J. Connolly, Carrie S. Munz
Movement of bull trout in the upper Jarbidge River watershed, Idaho and Nevada, 2008-09--A supplement to Open-File Report 2010-1033
We monitored bull trout (Salvelinus confluentus) in 2008 and 2009 as a continuation of our work in 2006 and 2007, which involved the tagging of 1,536 bull trout with passive integrated transponder (PIT) tags in the East Fork Jarbidge River and West Fork Jarbidge River and their tributaries in northeastern Nevada and southern Idaho. We installed PIT tag interrogation systems (PTISs) at established
Authors
Carrie S. Munz, M. Brady Allen, Patrick J. Connolly
Composition and relative abundance of fish species in the lower White Salmon River, Washington, prior to the removal of Condit Dam
Information about the composition and relative abundance of fish species was collected by a rotary screw trap and backpack electrofishing in the lower White Salmon River, Washington. The information was collected downstream of Condit Dam, which is at river kilometer (rkm) 5.2, and is proposed for removal in October 2011. A rotary screw trap was installed in the White Salmon River at rkm 1.5 and op
Authors
M. Brady Allen, Patrick J. Connolly
Big Spring spinedace and associated fish populations and habitat conditions in Condor Canyon, Meadow Valley Wash, Nevada
Executive Summary: This project was designed to document habitat conditions and populations of native and non-native fish within the 8-kilometer Condor Canyon section of Meadow Valley Wash, Nevada, with an emphasis on Big Spring spinedace (Lepidomeda mollispinis pratensis). Other native fish present were speckled dace (Rhinichthys osculus) and desert sucker (Catostomus clarki). Big Spring spinedac
Authors
Ian G. Jezorek, Patrick J. Connolly, Carrie S. Munz, Chris Dixon
Wind River watershed restoration, annual report November 2009 to October 2010.
This report summarizes work completed by U.S. Geological Survey’s Columbia River Research Laboratory (USGS-CRRL) in the Wind River subbasin during the period November 2009 through October 2010 under Bonneville Power Administration (BPA) contract 46102. Long term research in the Wind River has focused on assessments of steelhead/rainbow trout Oncorhynchus mykiss populations, interactions with intro
Authors
P.J. Connolly, I.G. Jezorek
Estimating the hatchery fraction of a natural population: a Bayesian approach
There is strong and growing interest in estimating the proportion of hatchery fish that are in a natural population (the hatchery fraction). In a sample of fish from the relevant population, some are observed to be marked, indicating their origin as hatchery fish. The observed proportion of marked fish is usually less than the actual hatchery fraction, since the observed proportion is determined b
Authors
Jarrett J. Barber, Kenneth G. Gerow, Patrick J. Connolly, Sarabdeep Singh
Sediment management strategies associated with dam removal in the State of Washington
Different removal strategies are described for dams in three diverse drainage basins (Wind River, White Salmon River, and Elwha River basins) in the State of Washington (USA). The comparisons between the strategies offer the opportunity to track the effects of sediment resulting from dam decommissioning in the Pacific Northwest and to determine possible effects on socio-economically important spec
Authors
C. S. Magirl, P.J. Connolly, B. Coffin, J.J. Duda, A.E. Draut
Distribution and movement of bull trout in the upper Jarbidge River watershed, Nevada
In 2006 and 2007, we surveyed the occurrence of bull trout (Salvelinus confluentus), the relative distributions of bull trout and redband trout (Oncorhynchus mykiss), and stream habitat conditions in the East and West Forks of the Jarbidge River in northeastern Nevada and southern Idaho. We installed passive integrated transponder (PIT) tag interrogation systems at strategic locations within the w
Authors
M. Brady Allen, Patrick J. Connolly, Matthew G. Mesa, Jodi Charrier, Chris Dixon
Guidelines for calculating and enhancing detection efficiency of PIT tag interrogation systems
With increasing use of passive integrated transponder (PIT) tags and reliance on stationary PIT tag interrogation systems to monitor fish populations, guidelines are offered to inform users how best to use limited funding and human resources to create functional systems that maximize a desired level of detection and precision. The estimators of detection efficiency and their variability as describ
Authors
Patrick J. Connolly