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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 4351

The development of genetic sex identification markers and evidence of a male heterogametic sex determination system in Red Shiner

The Red Shiner Cyprinella lutrensis is of increasing management interest as an invasive species that negatively impacts many native fishes throughout North America. Trojan sex chromosome (TSC)-carrying individuals could theoretically control invasive fish populations by skewing the sex ratio to 100% male. The efficacy of TSC-based control programs requires an understanding of a population's sex de
Authors
Chad N. Teal, D. Katharine Coykendall, Matthew R. Campbell, Thomas A. Delomas, Daniel L. Eardley, John A. Erwin, Daniel J. Schill, Javan Mathias Bauder, Scott A. Bonar, Melanie Culver

Geomorphology shapes relationships between animal communities and ecosystem function in large rivers

Understanding how the Earth's surface (i.e. ‘nature's stage') influences connections between biodiversity and ecosystem function (BEF) is a central objective in ecology. Despite recent calls to examine these connections at multiple trophic levels and at more complex and realistic scales, little is known about how landscape structure shapes BEF relationships among animal communities in nature. We c
Authors
Eric A. Scholl, Wyatt F. Cross, Christopher S. Guy

Thermal performance of the electron transport system Complex III in seven Alabama fishes

Management of fish populations for conservation in thermally variable systems requires an understanding of the fish's underlying physiology and responses to thermal stress. Physiological research at the organismal level provides information on the overall effects of stressors such as extreme temperature fluctuations. While experiments with whole organisms provide information as to the overall effe
Authors
Lindsay Horne, Dennis DeVries, Russell Wright, Elise R. Irwin, Benjamin Staton, Hisham Abdelrahman, James Stoeckel

Herbaceous production lost to tree encroachment in United States rangelands

Rangelands of the United States provide ecosystem services that benefit society and rural economies. Native tree encroachment is often overlooked as a primary threat to rangelands due to the slow pace of tree cover expansion and the positive public perception of trees. Still, tree encroachment fragments these landscapes and reduces herbaceous production, thereby threatening habitat quality for gra
Authors
S.L. Morford, B.W. Allred, Dirac Twidwell, M.O. Jones, J.D. Maestas, Caleb Powell Roberts, D.E. Naugle

The mysterious case of the missing razor clams

Oceans are changing and these changes are affecting animals that live there. Animals respond differently to changes in water temperature, food availability, or contaminants. Those responses can be seen in their genes. Gene transcription is a tool that allows scientists to see the response of an animal’s genes to its environment. We used gene transcription to compare two populations of Pacific razo
Authors
Heather Coletti, Lizabeth Bowen, Brenda Ballachey, Tammy L. Wilson, Shannon C. Waters, Michael Booz, Katrina Counihan, Tuula E. Hollmen, Benjamin Pister

The Bathy-drone: An autonomous unmanned drone-tethered sonar system

A unique drone-based system for underwater mapping (bathymetry) was developed at the University of Florida. The system, called the “Bathy-drone”, comprises a drone that drags, via a tether, a small vessel on the water surface in a raster pattern. The vessel is equipped with a recreational commercial off-the-shelf (COTS) sonar unit that has down-scan, side-scan, and chirp capabilities and logs GPS-
Authors
Antonio L. Diaz, Andrew E. Ortega, Henry Tingle, Andres Pulido, Orlando Cordero, Marisa Nelson, Nicholas E. Cocoves, Jaejeong Shin, Raymond Carthy, Benjamin E. Wilkinson, Peter G. Ifju

Pleistocene–Holocene vicariance, not Anthropocene landscape change, explains the genetic structure of American black bear (Ursus americanus) populations in the American Southwest and northern Mexico

The phylogeography of the American black bear (Ursus americanus) is characterized by isolation into glacial refugia, followed by population expansion and genetic admixture. Anthropogenic activities, including overharvest, habitat loss, and transportation infrastructure, have also influenced their landscape genetic structure. We describe the genetic structure of the American black bear in the Ameri
Authors
Matthew J. Gould, James W. Cain, Todd C. Atwood, Larisa E. Harding, Heather E. Johnson, Dave P. Onorato, Frederic S. Winslow, Gary W. Roemer

Congruence among multiple indices of habitat preference for species facing human-induced rapid environmental change: A case study using the Brewer's sparrow

Accurate evaluations of habitat preference are key to understanding optimal conditions for wildlife survival and reproduction. Habitat selection, however, usually is evaluated using a single index of preference, and congruence among multiple, relevant indices of preference is examined rarely.We assessed the concordance between patterns of habitat preference using three different indices of breedin
Authors
Max Carlin, Anna D. Chalfoun

Fish carcass deposition to suppress invasive lake trout through hypoxia causes limited, non-target effects on benthic invertebrates in Yellowstone Lake

Invasive species can have negative effects on native biodiversity and ecosystem function, and suppression is often required to minimize the effects. However, management actions to suppress invasive species may cause negative, unintended effects on non-target taxa. Across the United States, lake trout (Salvelinus namaycush) are invasive in many freshwater ecosystems, reducing native fish abundance
Authors
Michelle A. Briggs, Lindsey K. Albertson, Dominique R. Lujan, Lusha M. Tronstad, Hayley C. Glassic, Christopher S. Guy, Todd M. Koel

Industrial energy development decouples ungulate migration from the green wave

The ability to freely move across the landscape to track the emergence of nutritious spring green-up (termed ‘green-wave surfing’) is key to the foraging strategy of migratory ungulates. Across the vast landscapes traversed by many migratory herds, habitats are being altered by development with unknown consequences for surfing. Using a unique long-term tracking dataset, we found that when energy d
Authors
Ellen O. Aikens, Teal B. Wyckoff, Hall Sawyer, Matthew Kauffman

Simple statistical models can be sufficient for testing hypotheses with population time series data

Time-series data offer wide-ranging opportunities to test hypotheses about the physical and biological factors that influence species abundances. Although sophisticated models have been developed and applied to analyze abundance time series, they require information about species detectability that is often unavailable. We propose that in many cases, simpler models are adequate for testing hypothe
Authors
Seth J. Wenger, Edward S. Stowe, Keith B. Gido, Mary Freeman, Yoichiro Kanno, Nathan R. Franssen, Julian Olden, N. LeRoy Poff, Annika W. Walters, Phillip M. Bumpers, Meryl C. Mims, Mevin B. Hooten, Xinyi Lu

Genomic divergence, local adaptation, and complex demographic history may inform management of a popular sportfish species complex

The Neosho Bass (Micropterus velox), a former subspecies of the keystone top-predator and globally popular Smallmouth Bass (M. dolomieu), is endemic and narrowly restricted to small, clear streams of the Arkansas River Basin in the Central Interior Highlands (CIH) ecoregion, USA. Previous studies have detected some morphological, genetic, and genomic differentiation between the Neosho and Smallmou
Authors
J.C. Gunn, L.K. Berkman, J. Kopplelman, A.T. Taylor, Shannon K. Brewer, James M. Long, L.S. Eggert
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