Adam Pope
Adam is a Research Statistician (Biology) at the Columbia River Research Laboratory.
Science and Products
The North Delta Routing and Survival Management Tool
Understanding how routing modifications influence survival of juvenile salmon is complex because reach-specific survival and routing at key river junctions in the North Delta each have a different relationship with river flow. Therefore, to facilitate understanding of how routing modifications at key river junctions influence through-Delta survival, we developed this spreadsheet model to allow man
Distribution and stomach contents of fishes in the northern Sacramento-San Joaquin Delta, 2020-2022
This data set includes count, location, and ancillary habitat data for fishes sampled in adjacent reaches of Georgiana Slough, Sacramento River, and Steamboat Slough in the northern Sacramento-San Joaquin Delta. It also includes data on the stomach contents of selected individual black basses (Micropterus). Fishes were sampled by boat electrofishing from approximately January-May, 2020-2022, plus
Filter Total Items: 22
Using parentage-based tagging to estimate survival of Chinook salmon fry in a large storage reservoir
Research efforts focusing on salmonid populations have highlighted the need to better understand demographic parameters for the fry and parr life stages. Monitoring these small fish presents a challenge because negative effects from handling and tagging can bias subsequent parameter estimates. Removal models and associated sampling designs represent one class of mark-recapture models with potentia
Authors
Adam Pope, Tobias Kock, Russell Perry, Karen M. Cogliati, Kathleen G. O'Malley, Christina Amy Murphy, Dalton Hance, Scott D. Fielding
Survival implications of diversion entrainment for outmigrating juvenile Chinook Salmon (Oncorhynchus tshawytscha) and steelhead (O. mykiss)
Efforts to ameliorate negative effects of diversion dams on aquatic species of concern are important in rivers where water withdrawal supports agricultural economies and are likely to become increasingly important with impending climate change. A multiyear study was conducted to evaluate the survival consequences of diversion dam passage for juvenile Chinook Salmon (Oncorhynchus tshawytscha) and s
Authors
Tobias Kock, Scott D. Evans, Russell Perry, Patrick A. Monk, Michael S. Porter, Amy Hansen, Adam Pope
Spatial and temporal overlap between hatchery- and natural-origin steelhead and Chinook salmon during spawning in the Klickitat River, Washington, USA
A goal of many segregated salmonid hatchery programs is to minimize potential interbreeding between hatchery- and natural-origin fish. To assess this on the Klickitat River, Washington, USA, we used radiotelemetry during 2009–2014 to evaluate spatiotemporal spawning overlap between hatchery-origin and natural-origin steelhead Oncorhynchus mykiss and spring Chinook Salmon O. tshawytscha. We estimat
Authors
Joseph S. Zendt, Brady Allen, Tobias Kock, Russell Perry, Adam Pope
Simulating the migration dynamics of juvenile salmonids through rivers and estuaries using a hydrodynamically driven enhanced particle tracking model
Juvenile salmonids migrate hundreds of kilometers from their natal streams to mature in the ocean. Throughout this migration, they respond to environmental cues such as local water velocities and other stimuli to direct and modulate their movements, often through heavily modified riverine and estuarine habitats. Management strategies in an uncertain future of climate change and altered land use re
Authors
Vamsi Krishna Sridharan, Doug Jackson, Andrew M. Hein, Russell Perry, Adam Pope, Noble Hendrix, Eric M. Danner, Steven T. Lindley
Assessing the efficacy of using a parentage-based tagging survival model to evaluate two sources of mortality for juvenile Chinook salmon (Oncorhynchus tshawytscha) in Lookout Point Reservoir, Oregon
We conducted a study to assess the efficacy of using a parentage-based tagging survival model (PBT N-mixture model) to evaluate two sources of mortality for juvenile Chinook salmon (Oncorhynchus tshawytscha) in Lookout Point Reservoir, Oregon. The model was originally developed to evaluate reservoir mortality because of predation from piscivorous fish. However, recent studies have also found that
Authors
Dalton J. Hance, Tobias J. Kock, Russell W. Perry, Adam C. Pope
Quantifying the effects of tides, river flow, and barriers on movements of Chinook Salmon smolts at junctions in the Sacramento–San Joaquin River Delta using multistate models
Successful migration of Chinook Salmon (Oncorhynchus tshawytscha) smolts seaward in the Sacramento – San Joaquin River Delta (hereafter, Delta) requires navigating a network of numerous branching channels. Within the Delta, several key junctions route smolts either towards more direct paths to the ocean or towards the interior Delta, an area associated with decreased survival. Movements within the
Authors
Michael Dodrill, Russell Perry, Adam Pope, Xiaochun Wang
From drought to deluge: Spatiotemporal variation in migration routing, survival, travel time and floodplain use of an endangered migratory fish
We developed a novel statistical model to relate the daily survival and migration dynamics of an endangered anadromous fish to river flow and water temperature during both extreme drought and severe flooding in an intensively managed river system. Our Bayesian temporally stratified multistate mark recapture model integrates over unobserved travel times and route transitions to efficiently estimate
Authors
Dalton Hance, Russell Perry, Adam Pope, Arnold J. Ammann, Jason L. Hassrick, Gabriel S. Hansen
Adult sockeye salmon responses to transplanting upstream of an impassable dam
The Yakama Nation manages a program for reintroducing Sockeye Salmon Oncorhynchus nerka upstream of Cle Elum Dam in the Yakima River basin. The program involves transplanting of a mix of adult Sockeye Salmon from two middle Columbia River donor stocks, Lake Wenatchee (WEN) and Osoyoos Lake (OSO), with the goal of establishing a self-sustaining population in the basin. In 2017, a subset of the tran
Authors
Tobias Kock, Scott D. Evans, Brian P. Saluskin, Andrew P. Matala, Richard Visser, Mark.V. Johnston, Peter F. Galbreath, Adam Pope
Juvenile Chinook salmon survival, travel time, and floodplain use relative to riverine channels in the Sacramento–San Joaquin River Delta
Floodplains provide multiple benefits to both resident and migratory fish species, including juvenile Chinook Salmon Oncorhynchus tshawytscha, but direct comparisons of survival during migration through a floodplain versus riverine routes are scarce. The Yolo Bypass is a broad floodplain of the Sacramento River that floods in about 30% of years in response to large, uncontrolled runoff events. We
Authors
Adam Pope, Russell Perry, Brett N. Harvey, Dalton Hance, Hal C Hansel
Combining models of the critical streakline and the cross-sectional distribution of juvenile salmon to predict fish routing at river junctions
Because fish that enter the interior Delta have poorer survival than those emigrating via the Sacramento River, understanding the mechanisms that drive entrainment rates at side channel junctions is critically important for the management of imperiled juvenile salmon. Here, we implement a previously proposed process-based conceptual model to study entrainment rates based on three linked elements:
Authors
Dalton Hance, Russell Perry, Jon R. Burau, Aaron R. Blake, Paul Stumpner, Xiaochun Wang, Adam Pope
A temporally stratified extension of space‐for‐time Cormack–Jolly–Seber for migratory animals
Understanding drivers of temporal variation in demographic parameters is a central goal of mark‐recapture analysis. To estimate the survival of migrating animal populations in migration corridors, space‐for‐time mark–recapture models employ discrete sampling locations in space to monitor marked populations as they move past monitoring sites, rather than the standard practice of using fixed samplin
Authors
Dalton J. Hance, Russell Perry, John Plumb, Adam Pope
Using the STARS model to evaluate the effects of the proposed action for the reinitiation of consultation on the coordinated long-term operation of the Central Valley and State Water Project
In 2016, the U.S. Bureau of Reclamation (USBR) and California Department of Water Resources requested a reinitiation of consultation under Section 7 of the Endangered Species Act on the coordinated long-term operations of the Central Valley and State Water Projects. This resulted in a Biological Assessment released by USBR in 2019. In its analysis of the Biological Assessment for its Biological Op
Authors
Russell W. Perry, Adam C. Pope, Vamsi K. Sridharan
Science and Products
The North Delta Routing and Survival Management Tool
Understanding how routing modifications influence survival of juvenile salmon is complex because reach-specific survival and routing at key river junctions in the North Delta each have a different relationship with river flow. Therefore, to facilitate understanding of how routing modifications at key river junctions influence through-Delta survival, we developed this spreadsheet model to allow man
Distribution and stomach contents of fishes in the northern Sacramento-San Joaquin Delta, 2020-2022
This data set includes count, location, and ancillary habitat data for fishes sampled in adjacent reaches of Georgiana Slough, Sacramento River, and Steamboat Slough in the northern Sacramento-San Joaquin Delta. It also includes data on the stomach contents of selected individual black basses (Micropterus). Fishes were sampled by boat electrofishing from approximately January-May, 2020-2022, plus
Filter Total Items: 22
Using parentage-based tagging to estimate survival of Chinook salmon fry in a large storage reservoir
Research efforts focusing on salmonid populations have highlighted the need to better understand demographic parameters for the fry and parr life stages. Monitoring these small fish presents a challenge because negative effects from handling and tagging can bias subsequent parameter estimates. Removal models and associated sampling designs represent one class of mark-recapture models with potentia
Authors
Adam Pope, Tobias Kock, Russell Perry, Karen M. Cogliati, Kathleen G. O'Malley, Christina Amy Murphy, Dalton Hance, Scott D. Fielding
Survival implications of diversion entrainment for outmigrating juvenile Chinook Salmon (Oncorhynchus tshawytscha) and steelhead (O. mykiss)
Efforts to ameliorate negative effects of diversion dams on aquatic species of concern are important in rivers where water withdrawal supports agricultural economies and are likely to become increasingly important with impending climate change. A multiyear study was conducted to evaluate the survival consequences of diversion dam passage for juvenile Chinook Salmon (Oncorhynchus tshawytscha) and s
Authors
Tobias Kock, Scott D. Evans, Russell Perry, Patrick A. Monk, Michael S. Porter, Amy Hansen, Adam Pope
Spatial and temporal overlap between hatchery- and natural-origin steelhead and Chinook salmon during spawning in the Klickitat River, Washington, USA
A goal of many segregated salmonid hatchery programs is to minimize potential interbreeding between hatchery- and natural-origin fish. To assess this on the Klickitat River, Washington, USA, we used radiotelemetry during 2009–2014 to evaluate spatiotemporal spawning overlap between hatchery-origin and natural-origin steelhead Oncorhynchus mykiss and spring Chinook Salmon O. tshawytscha. We estimat
Authors
Joseph S. Zendt, Brady Allen, Tobias Kock, Russell Perry, Adam Pope
Simulating the migration dynamics of juvenile salmonids through rivers and estuaries using a hydrodynamically driven enhanced particle tracking model
Juvenile salmonids migrate hundreds of kilometers from their natal streams to mature in the ocean. Throughout this migration, they respond to environmental cues such as local water velocities and other stimuli to direct and modulate their movements, often through heavily modified riverine and estuarine habitats. Management strategies in an uncertain future of climate change and altered land use re
Authors
Vamsi Krishna Sridharan, Doug Jackson, Andrew M. Hein, Russell Perry, Adam Pope, Noble Hendrix, Eric M. Danner, Steven T. Lindley
Assessing the efficacy of using a parentage-based tagging survival model to evaluate two sources of mortality for juvenile Chinook salmon (Oncorhynchus tshawytscha) in Lookout Point Reservoir, Oregon
We conducted a study to assess the efficacy of using a parentage-based tagging survival model (PBT N-mixture model) to evaluate two sources of mortality for juvenile Chinook salmon (Oncorhynchus tshawytscha) in Lookout Point Reservoir, Oregon. The model was originally developed to evaluate reservoir mortality because of predation from piscivorous fish. However, recent studies have also found that
Authors
Dalton J. Hance, Tobias J. Kock, Russell W. Perry, Adam C. Pope
Quantifying the effects of tides, river flow, and barriers on movements of Chinook Salmon smolts at junctions in the Sacramento–San Joaquin River Delta using multistate models
Successful migration of Chinook Salmon (Oncorhynchus tshawytscha) smolts seaward in the Sacramento – San Joaquin River Delta (hereafter, Delta) requires navigating a network of numerous branching channels. Within the Delta, several key junctions route smolts either towards more direct paths to the ocean or towards the interior Delta, an area associated with decreased survival. Movements within the
Authors
Michael Dodrill, Russell Perry, Adam Pope, Xiaochun Wang
From drought to deluge: Spatiotemporal variation in migration routing, survival, travel time and floodplain use of an endangered migratory fish
We developed a novel statistical model to relate the daily survival and migration dynamics of an endangered anadromous fish to river flow and water temperature during both extreme drought and severe flooding in an intensively managed river system. Our Bayesian temporally stratified multistate mark recapture model integrates over unobserved travel times and route transitions to efficiently estimate
Authors
Dalton Hance, Russell Perry, Adam Pope, Arnold J. Ammann, Jason L. Hassrick, Gabriel S. Hansen
Adult sockeye salmon responses to transplanting upstream of an impassable dam
The Yakama Nation manages a program for reintroducing Sockeye Salmon Oncorhynchus nerka upstream of Cle Elum Dam in the Yakima River basin. The program involves transplanting of a mix of adult Sockeye Salmon from two middle Columbia River donor stocks, Lake Wenatchee (WEN) and Osoyoos Lake (OSO), with the goal of establishing a self-sustaining population in the basin. In 2017, a subset of the tran
Authors
Tobias Kock, Scott D. Evans, Brian P. Saluskin, Andrew P. Matala, Richard Visser, Mark.V. Johnston, Peter F. Galbreath, Adam Pope
Juvenile Chinook salmon survival, travel time, and floodplain use relative to riverine channels in the Sacramento–San Joaquin River Delta
Floodplains provide multiple benefits to both resident and migratory fish species, including juvenile Chinook Salmon Oncorhynchus tshawytscha, but direct comparisons of survival during migration through a floodplain versus riverine routes are scarce. The Yolo Bypass is a broad floodplain of the Sacramento River that floods in about 30% of years in response to large, uncontrolled runoff events. We
Authors
Adam Pope, Russell Perry, Brett N. Harvey, Dalton Hance, Hal C Hansel
Combining models of the critical streakline and the cross-sectional distribution of juvenile salmon to predict fish routing at river junctions
Because fish that enter the interior Delta have poorer survival than those emigrating via the Sacramento River, understanding the mechanisms that drive entrainment rates at side channel junctions is critically important for the management of imperiled juvenile salmon. Here, we implement a previously proposed process-based conceptual model to study entrainment rates based on three linked elements:
Authors
Dalton Hance, Russell Perry, Jon R. Burau, Aaron R. Blake, Paul Stumpner, Xiaochun Wang, Adam Pope
A temporally stratified extension of space‐for‐time Cormack–Jolly–Seber for migratory animals
Understanding drivers of temporal variation in demographic parameters is a central goal of mark‐recapture analysis. To estimate the survival of migrating animal populations in migration corridors, space‐for‐time mark–recapture models employ discrete sampling locations in space to monitor marked populations as they move past monitoring sites, rather than the standard practice of using fixed samplin
Authors
Dalton J. Hance, Russell Perry, John Plumb, Adam Pope
Using the STARS model to evaluate the effects of the proposed action for the reinitiation of consultation on the coordinated long-term operation of the Central Valley and State Water Project
In 2016, the U.S. Bureau of Reclamation (USBR) and California Department of Water Resources requested a reinitiation of consultation under Section 7 of the Endangered Species Act on the coordinated long-term operations of the Central Valley and State Water Projects. This resulted in a Biological Assessment released by USBR in 2019. In its analysis of the Biological Assessment for its Biological Op
Authors
Russell W. Perry, Adam C. Pope, Vamsi K. Sridharan