Computational Tools and Services
Computational Tools and Services
CDI projects tagged with Computational Tools and Services. Computational tools and services include applications, Web services, data discovery tools, models, semantic services and tools, infrastructure, data brokers, and visualization tools.
Filter Total Items: 119
Workflows to Support Integrated Predictive Science Capacity: Forecasting Invasive Species for Natural Resource Planning and Risk Assessment
Insect pests cost billions of dollars per year globally, negatively impacting food crops and infrastructure and contributing to the spread of disease. Timely information regarding developmental stages of pests can facilitate early detection and control, increasing efficiency and effectiveness. To address this need, the USA National Phenology Network (USA-NPN) created a suite of “Pheno Forecast” ma
Integrating Disparate Spatial Datasets from Local to National Scale for Open-Access Web-Based Visualization and Analysis: A Case Study Compiling U.S. Landslide Inventories
Spatial data on landslide occurrence across the U.S. varies greatly in quality, accessibility, and extent. This problem of data variability is common across USGS Mission Areas; it presents an obstacle to developing national-scale products and to identifying areas with relatively good/bad data coverage. We compiled available data of known landslides into a national-scale, searchable online map, whi
National Alert Risk Mapper for Nonindigenous Aquatic Species
The Nonindigenous Aquatic Species (NAS) Database and Alert System (https://nas.er.usgs.gov/default.aspx) provides a framework for the rapid dissemination of new invasions as they are incorporated into the NAS Database. The system notifies registered users of new sightings of >1,330 non-native aquatic species as part of national-scale early detection and rapid response systems (EDRR), and in suppor
An Interactive Web-Based Tool for Anticipating Long-term Drought Risk
Droughts are becoming more frequent and severe and this trend is expected to continue in the coming century. Drought effects on natural resources include reduced water availability for plants and humans, as well as increased insect, disease, and vegetation mortality. Land managers need more information regarding how water availability may change and how drought will affect their sites in the futur
An Interactive Web-based Application for Earthquake-triggered Ground Failure Inventories
Inventories of landslides and liquefaction triggered by major earthquakes are key research tools that can be used to develop and test hazard models. To eliminate redundant effort, we created a centralized and interactive repository of ground failure inventories that currently hosts 32 inventories generated by USGS and non-USGS authors and designed a pipeline for adding more as they become availabl
Automating the use of citizen scientists’ biodiversity surveys in iNaturalist to facilitate early detection of species’ responses to climate change
A BioBlitz is a field survey method for finding and documenting as many species as possible in a specific area over a short period. The National Park Service and National Geographic Society hosted the largest BioBlitz survey ever in 2016; people in more than 120 national parks used the iNaturalist app on mobile devices to document organisms they observed. Resulting records have Global Positioning
Developing APIs to support enterprise level monitoring using existing tools
In this age of rapidly developing technology, scientific information is constantly being gathered across large spatial scales. Yet, our ability to coordinate large-scale monitoring efforts depends on development of tools that leverage and integrate multiple sources of data. North American bats are experiencing unparalleled population declines. The North American Bat Monitoring Program (NABat), a
Empowering decision-makers: A dynamic web interface for running Bayesian networks
U.S. Geological Survey (USGS) scientists are at the forefront of research that is critical for decision-making, particularly through the development of models (Bayesian networks, or BNs) that forecast coastal change. The utility of these tools outside the scientific community has been limited because they rely on expensive, technical software and a moderate understanding of statistical analyses. W
Evaluation and testing of standardized forest vegetation metrics derived from lidar data
The USGS 3D Elevation Program (3DEP) is managing the acquisition of lidar data across the Nation for high resolution mapping of the land surface, useful for multiple applications. Lidar data is initially collected as 3-dimensional “point clouds” that map the interaction of the airborne laser with earth surface features, including vegetation, buildings, and ground features. Generally the product of
Exploring the USGS Science Data Life Cycle in the Cloud
Executive Summary Traditionally in the USGS, data is processed and analyzed on local researcher computers, then moved to centralized, remote computers for preservation and publishing (ScienceBase, Pubs Warehouse). This approach requires each researcher to have the necessary hardware and software for processing and analysis, and also to bring all external data required for the workflow over the int
Extending ScienceCache—a Mobile Application for Data Collection—to Accommodate Broader Use within USGS
ScienceCache was originally developed as a mobile device data collection application for a citizen science project. ScienceCache communicates with a centralized database that facilitates near real-time use of collected data that enhances efficiency of data collection in the field. We improved ScienceCache by creating a flexible, reliable platform that reduces effort required to set up a survey a
Flocks of a feather dock together: Using Docker and HTCondor to link high-throughput computing across the USGS
USGS scientists often face computationally intensive tasks that require high-throughput computing capabilities. Several USGS facilities use HTCondor to run their computational pools but are not necessarily connected to the larger USGS pool. This project demonstrated how to connect HTCondor pools by flocking, or coordinating, within the USGS. In addition to flocking the Upper Midwest Environmental