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Publications

The following list of California Water Science Center publications includes both official USGS publications and journal articles authored by our scientists.

Filter Total Items: 1734

Pyrethroid insecticide concentrations and toxicity in streambed sediments and loads in surface waters of the San Joaquin Valley, California, USA

Pyrethroid insecticide use in California, USA, is growing, and there is a need to understand the fate of these compounds in the environment. Concentrations and toxicity were assessed in streambed sediment of the San Joaquin Valley of California, one of the most productive agricultural regions of the United States. Concentrations were also measured in the suspended sediment associated with irrigati
Authors
Joseph L. Domagalski, Donald P. Weston, Minghua Zhang, Michelle L. Hladik

3D volumetric modeling of grapevine biomass using Tripod LiDAR

Tripod mounted laser scanning provides the means to generate high-resolution volumetric measures of vegetation structure and perennial woody tissue for the calculation of standing biomass in agronomic and natural ecosystems. Other than costly destructive harvest methods, no technique exists to rapidly and accurately measure above-ground perennial tissue for woody plants such as Vitis vinifera (com
Authors
K.E. Keightley, G.W. Bawden

Influence of organic carbon loading, sediment associated metal oxide content and sediment grain size distributions upon Cryptosporidium parvum removal during riverbank filtration operations, Sonoma County, CA

This study assessed the efficacy for removing Cryptosporidium parvum oocysts of poorly sorted, Fe- and Al-rich, subsurface sediments collected from 0.9 to 4.9 and 1.7–13.9 m below land surface at an operating riverbank filtration (RBF) site (Russian River, Sonoma County, CA). Both formaldehyde-killed oocysts and oocyst-sized (3 μm) microspheres were employed in sediment-packed flow-through and sta
Authors
D.W. Metge, R.W. Harvey, G. R. Aiken, R. Anders, G. Lincoln, James Jasperse

Determining sources of dissolved organic carbon and disinfection byproduct precursors to the McKenzie River, Oregon

This study was conducted to determine the main sources of dissolved organic carbon (DOC) and disinfection byproduct (DBP) precursors to the McKenzie River, Oregon (USA). Water samples collected from the mainstem, tributaries, and reservoir outflows were analyzed for DOC concentration and DBP formation potentials (trihalomethanes [THMFPs] and haloacetic acids [HAAFPs]). In addition, optical propert
Authors
Tamara E.C. Kraus, Chauncey W. Anderson, Karl Morgenstern, Bryan D. Downing, Brian A. Pellerin, Brian A. Bergamaschi

Simulation and analysis of conjunctive use with MODFLOW's farm process

The extension of MODFLOW onto the landscape with the Farm Process (MF-FMP) facilitates fully coupled simulation of the use and movement of water from precipitation, streamflow and runoff, groundwater flow, and consumption by natural and agricultural vegetation throughout the hydrologic system at all times. This allows for more complete analysis of conjunctive use water-resource systems than previo
Authors
R. T. Hanson, W. Schmid, C.C. Faunt, B. Lockwood

Comparison of watershed disturbance predictive models for stream benthic macroinvertebrates for three distinct ecoregions in western US

The successful use of macroinvertebrates as indicators of stream condition in bioassessments has led to heightened interest throughout the scientific community in the prediction of stream condition. For example, predictive models are increasingly being developed that use measures of watershed disturbance, including urban and agricultural land-use, as explanatory variables to predict various metric
Authors
Ian R. Waite, Larry R. Brown, Jonathan Kennen, Jason T. May, Thomas F. Cuffney, James L. Orlando, Kimberly A. Jones

The tidally averaged momentum balance in a partially and periodically stratified estuary

Observations of turbulent stresses and mean velocities over an entire spring–neap cycle are used to evaluate the dynamics of tidally averaged flows in a partially stratified estuarine channel. In a depth-averaged sense, the net flow in this channel is up estuary due to interaction of tidal forcing with the geometry of the larger basin. The depth-variable tidally averaged flow has the form of an es
Authors
M.T. Stacey, Matthew L. Brennan, Jon R. Burau, Stephen G. Monismith

Gene movement and genetic association with regional climate gradients in California valley oak (Quercus lobata Née) in the face of climate change

Rapid climate change jeopardizes tree populations by shifting current climate zones. To avoid extinction, tree populations must tolerate, adapt, or migrate. Here we investigate geographic patterns of genetic variation in valley oak, Quercus lobata Née, to assess how underlying genetic structure of populations might influence this species’ ability to survive climate change. First, to understand how
Authors
Victoria L. Sork, Frank W. Davis, Robert Westfall, Alan L. Flint, Makihiko Ikegami, Hongfang Wang, Delphine Grivet

Use of geochemical, isotopic, and age tracer data to develop models of groundwater flow for the purpose of water management, northern High Plains aquifer, USA

A prolonged drought in the High Plains of Nebraska prompted the use of groundwater for cooling at the largest coal-fired power plant in the State. Prior to the drought, groundwater was used primarily for irrigation and the power plant relied exclusively on surface water stored in a nearby reservoir for cooling. Seepage from the reservoir system during the past ∼75 a has resulted in the buildup of
Authors
Peter B. McMahon, C. P. Carney, E. P. Poeter, Steven M. Peterson

Effects of hydrologic infrastructure on flow regimes of California's Central Valley rivers: Implications for fish populations

Alteration of natural flow regimes is generally acknowledged to have negative effects on native biota; however, methods for defining ecologically appropriate flow regimes in managed river systems are only beginning to be developed. Understanding how past and present water management has affected rivers is an important part of developing such tools. In this paper, we evaluate how existing hydrologi
Authors
Larry R. Brown, Marissa L. Bauer

Analysis of pelagic species decline in the upper San Francisco Estuary using multivariate autoregressive modeling (MAR)

Four species of pelagic fish of particular management concern in the upper San Francisco Estuary, California, USA, have declined precipitously since ca. 2002: delta smelt (Hypomesus transpacificus), longfin smelt (Spirinchus thaleichthys), striped bass (Morone saxatilis), and threadfin shad (Dorosoma petenense). The estuary has been monitored since the late 1960s with extensive collection of data
Authors
Ralph Mac Nally, James R. Thomson, Wim J. Kimmerer, Frederick Feyrer, Ken B. Newman, Andy Sih, William A. Bennett, Larry R. Brown, Erica Fleishman, Steven D. Culberson, Gonzalo Castillo

Bayesian change point analysis of abundance trends for pelagic fishes in the upper San Francisco Estuary

We examined trends in abundance of four pelagic fish species (delta smelt, longfin smelt, striped bass, and threadfin shad) in the upper San Francisco Estuary, California, USA, over 40 years using Bayesian change point models. Change point models identify times of abrupt or unusual changes in absolute abundance (step changes) or in rates of change in abundance (trend changes). We coupled Bayesian
Authors
James R. Thompson, Wim J. Kimmerer, Larry R. Brown, Ken B. Newman, Ralph Mac Nally, William A. Bennett, Frederick Feyrer, Erica Fleishman