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Publications

The USGS publishes peer-reviewed reports and journal articles which are used by Chesapeake Bay Program resource managers and policy makers to make science-based decisions for ecosystem conservation and restoration. Use the Search box below to find publications on selected topics.

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Filter Total Items: 901

Long-term annual aerial surveys of submersed aquatic vegetation (SAV) support science, management, and restoration

Aerial surveys of coastal habitats can uniquely inform the science and management of shallow, coastal zones, and when repeated annually, they reveal changes that are otherwise difficult to assess from ground-based surveys. This paper reviews the utility of a long-term (1984-present) annual aerial monitoring program for submersed aquatic vegetation (SAV) in Chesapeake Bay, its tidal tributaries, an
Authors
Robert J. Orth, William C. Dennison, Cassie Gurbisz, Michael Hannam, Jennifer L. Keisman, J. Brooke Landry, Jonathan S. Lefcheck, Kenneth A. Moore, Rebecca Murphy, Christopher J. Patrick, Jeremy Testa, Donald E. Weller, David J. Wilcox, Richard A. Batiuk

Nitrogen reductions have decreased hypoxia in the Chesapeake Bay: Evidence from empirical and numerical modeling

Seasonal hypoxia is a characteristic feature of the Chesapeake Bay due to anthropogenic nutrient input from agriculture and urbanization throughout the watershed. Although coordinated management efforts since 1985 have reduced nutrient inputs to the Bay, oxygen concentrations at depth in the summer still frequently fail to meet water quality standards that have been set to protect critical estuari
Authors
Luke T Frankel, Marjorie A. M. Friedrichs, Pierre St-Laurent, Aaron J. Bever, Romuald N. Lipcius, Gopal Bhatt, Gary W. Shenk

The statistical power to detect regional temporal trends in riverine contaminants in the Chesapeake Bay Watershed, USA

Chemical contamination of riverine ecosystems is largely a result of urbanization, industrialization, and agricultural activities occurring on adjacent terrestrial landscapes. Land management activities (e.g., Best Management Practices) are an important tool used to reduce point and non-point sources of pollution. However, the ability to confidently make inferences about the efficacy of land manag
Authors
Tyler Wagner, Paul McLaughlin, Kelly L. Smalling, Sara E. Breitmeyer, Stephanie Gordon, Gregory Noe

Using fish community and population indicators to assess the biological condition of streams and rivers of the Chesapeake Bay watershed, USA

The development of indicators to assess relative freshwater condition is critical for management and conservation. Predictive modeling can enhance the utility of indicators by providing estimates of condition for unsurveyed locations. Such approaches grant understanding of where “good” and “poor” conditions occur and provide insight into landscape contexts supporting such conditions. However, as a
Authors
Kelly O. Maloney, Kevin P. Krause, Matthew Joseph Cashman, Wesley M. Daniel, Benjamin Paul Gressler, Daniel J. Wieferich, John A. Young

Experimental tree mortality does not induce marsh transgression in a Chesapeake Bay low-lying coastal forest

Transgression into adjacent uplands is an important global response of coastal wetlands to accelerated rates of sea level rise. “Ghost forests” mark a signature characteristic of marsh transgression on the landscape, as changes in tidal inundation and salinity cause bordering upland tree mortality, increase light availability, and the emergence of tidal marsh species due to reduced competition. To
Authors
David C Walters, Joel A. Carr, Alyssa Hockaday, Joshua A Jones, Eliza McFarland, Katya Kovalenko, Matthew L. Kirwan, Donald Cahoon, Glenn R. Guntenspergen

Nitrogen in the Chesapeake Bay watershed—A century of change, 1950–2050

ForewordSustaining the quality of the Nation’s water resources and the health of our diverse ecosystems depends on the availability of sound water-resources data and information to develop effective, science-based policies. Effective management of water resources also brings more certainty and efficiency to important economic sectors. Taken together, these actions lead to immediate and long-term e
Authors
John W. Clune, Paul D. Capel, Matthew P. Miller, Douglas A. Burns, Andrew J. Sekellick, Peter R. Claggett, Richard H. Coupe, Rosemary M. Fanelli, Ana Maria Garcia, Jeff P. Raffensperger, Silvia Terziotti, Gopal Bhatt, Joel D. Blomquist, Kristina G. Hopkins, Jennifer L. Keisman, Lewis C. Linker, Gary W. Shenk, Richard A. Smith, Alex M. Soroka, James S. Webber, David M. Wolock, Qian Zhang

Chesapeake Bay: A case study in resiliency and restoration

Chesapeake Bay (“mother of waters” or the “great shellfish Bay” in Algonquin), is the largest estuary in the United States and arguably the best studied estuary in the world. Chesapeake Bay is immense, with the main stem stretching 200 nautical miles (315 km) from the mouth of the Susquehanna River to its terminus at the Atlantic Ocean and an overall watershed encompassing 64,000 mi2 (165,000 km2)
Authors
Richard R Arnold, William C. Dennison, Louis A. Etgen, Peter Goodwin, Michael Paolisso, Gary W. Shenk, Ann Swanson, Nguyen Vargas

Population genetics of Brook Trout (Salvelinus fontinalis) in the southern Appalachian Mountains

Broad-scale patterns of genetic diversity for Brook Trout remain poorly understood across their endemic range in the eastern United States. We characterized variation at 12 microsatellite loci in 22,020 Brook Trout among 836 populations from Georgia, USA to Quebec, Canada to the western Great Lakes region. Within-population diversity was typically lower in the southern Appalachians relative to the
Authors
David C. Kazyak, Barbara A. Lubinski, Matt A. Kulp, K. C. Pregler, Andrew R. Whiteley, Eric M. Hallerman, Jason A. Coombs, Y. Kanno, Jacob Rash, Raymond P. Morgan II, Jim Habera, Jason Henegar, T. Casey Weathers, Matthew T. Sell, Anthony Rabern, Dan Rankin, Tim L. King

Watershed and estuarine controls both influence plant community and tree growth changes in tidal freshwater forested wetlands along two U.S. mid-Atlantic rivers

The tidal freshwater zone near the estuarine head-of-tide is potentially sensitive to both sea-level rise and associated salinity increases as well as changing watershed inputs of freshwater and nutrients. We evaluated the vegetation response of tidal freshwater forested wetlands (TFFW) to changes in nontidal river versus estuarine controls along the longitudinal gradient of the Mattaponi and Pamu
Authors
Gregory Noe, Norman A Bourg, Ken Krauss, Jamie A. Duberstein, Cliff R. Hupp

Optimization of a suite of flathead catfish (Pylodictis olivaris) microsatellite markers for understanding the population genetics of introduced populations in the northeast United States

Flathead catfish are rapidly expanding into nonnative waterways throughout the United States. Once established, flathead catfish may cause disruptions to the local ecosystem through consumption and competition with native fishes, including species of conservation concern. Flathead catfish often become a popular sport fish in their introduced range, and so management strategies must frequently bala
Authors
Shannon L. White, Michael S. Eackles, Tyler Wagner, Megan K. Schall, Geoffrey Smith, Julian Avery, David C. Kazyak

The Chesapeake Bay program modeling system: Overview and recommendations for future development

The Chesapeake Bay is the largest, most productive, and most biologically diverse estuary in the continental United States providing crucial habitat and natural resources for culturally and economically important species. Pressures from human population growth and associated development and agricultural intensification have led to excessive nutrient and sediment inputs entering the Bay, negatively
Authors
Raleigh Hood, Gary W. Shenk, Rachel L Dixon, Sean M. C. Smith, William P. Ball, Jesse Bash, R. Batiuk, Kathy Boomer, Damian C Brady, Carl Cerco, Peter Claggett, Kim de Mutsert, Zachary M. Easton, Andrew J Elmore, Marjorie A. M. Friedrichs, Lora A. Harris, Thomas F. Ihde, Iara Lacher, Li Li, Lewis C. Linker, Andrew Miller, Julia Moriarty, Gregory Noe, George Onyullo, Kenneth A Rose, Katherine Skalak, Richard Tian, Tamie L Veith, Lisa A. Wainger, Donald E. Weller, Yinglong J. Zhang

Supporting cost-effective watershed management strategies for Chesapeake Bay using a modeling and optimization framework

Extensive efforts to adaptively manage nutrient pollution rely on Chesapeake Bay Program's (Phase 6) Watershed Model, called Chesapeake Assessment Scenario Tool (CAST), which helps decision-makers plan and track implementation of Best Management Practices (BMPs). We describe mathematical characteristics of CAST and develop a constrained nonlinear BMP-subset model, software, and visualization frame
Authors
Daniel E Kaufman, Gary W. Shenk, Gopal Bhatt, Kevin Asplen, Olivia H. Devereux, Jessica Rigelman, J. Hugh Ellis, Benjamin F Hobbs, Darrell J Bosch, George L Van Houtven, Arthur E McGarity, Lewis C. Linker, William P. Ball