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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41758

Linear and landscape disturbances alter Mojave desert tortoise movement behavior

Introduction: Animal movements are influenced by landscape features; disturbances to the landscape can alter movements, dispersal, and ultimately connectivity among populations. Faster or longer movements adjacent to a localized disturbance or within disturbed areas could indicate reduced habitat quality whereas slower or shorter movements and reduced movements may indicate greater availability of
Authors
Steven J. Hromada, Todd C. Esque, A. G. Vandergast, K. Kristina Drake, Felicia Chen, Benjamin O Gottsacker, Jordan Andrew Swart, Ken E Nussear

Putting down roots: Afforestation and bank cohesion of Icelandic Rivers

Riparian vegetation is widely recognized as a critical component of functioning fluvial systems. Human pressures on woody vegetation including riparian areas have had lasting effects, especially at high latitude. In Iceland, prior to human settlement, native downy birch woodlands covered approximately 15%–40% of the land area compared to 1%–2% today. Afforestation efforts include planting seedling
Authors
Sara L. Rathburn, Prostur Eysteinsson, Þorsteinn Sæmundsson, John T. Kemper, Celeste D. Wieting, Jonathan M. Friedman

Pollinator conservation and climate science at the U.S. Geological Survey

Introduction Ecosystems—whether agricultural, urban, or natural—depend on pollinators, great and small. Pollinators in the form of bees, birds, butterflies, bats, and even moths provide vital, but often invisible services, from contributing to biodiverse terrestrial wildlife and plant communities to supporting healthy watersheds. Pollinator declines worldwide have been noted as land-use and climat
Authors
Elise R. Irwin, Jonathan R. Mawdsley

A new DNA extraction method (HV-CTAB-PCI) for amplification of nuclear markers from open ocean-retrieved faeces of an herbivorous marine mammal, the dugong

Non-invasively collected faecal samples are an alternative source of DNA to tissue samples, that may be used in genetic studies of wildlife when direct sampling of animals is difficult. Although several faecal DNA extraction methods exist, their efficacy varies between species. Previous attempts to amplify mitochondrial DNA (mtDNA) markers from faeces of wild dugongs (Dugong dugon) have met with l
Authors
Vicky Ooi, Lee McMichael, Margaret Hunter, Aristide Takoukam Kamla, Janet M. Lanyon

Evaluating population trends of juvenile Atlantic Sturgeon at low abundance in a dynamic estuarine environment (Hudson River, New York)

Evaluating population trends in dynamic estuarine environments can be challenging, especially when survey data include a high percentage of zero observations. In fishery-independent surveys, zeros that come from reduced susceptibility to sample gears and reduced availability of the population to the survey impact survey catchability and negatively bias relative abundance indices. A zero-inflated n
Authors
Mark Richard Dufour, Song S. Qian

Assembly of the largest squamate reference genome to date: The western fence lizard, Sceloporus occidentalis

Spiny lizards (genus Sceloporus) have long served as important systems for studies of behavior, thermal physiology, dietary ecology, vector biology, speciation, and biogeography. The western fence lizard, Sceloporus occidentalis, is found across most of the major biogeographical regions in the western United States and northern Baja California, Mexico, inhabiting a wide range of habitats, from gra
Authors
Anusha P. Bishop, Erin P. Westeen, Michael L. Yuan, Merly Escalona, Eric Beraut, Colin Fairbairn, Mohan P. A. Marimuthu, Oanh Nguyen, Noravit Chumchim, Erin Toffelmier, Robert N. Fisher, H. Bradley Shaffer, Ian J. Wang

Antimycin A species sensitivity distribution: Perspectives for non-indigenous fish control

The global transfer of aquatic biota outside their native geographical range has resulted in dramatic changes to biological communities. Many nonnative species introductions are facilitated by human activity and then spread intra-continentally through connected watersheds once established. Resource managers therefore utilize multiple control technologies, such as management chemicals, for fisherie
Authors
Gavin Nicholas Saari

Historical DNA reveals climate adaptation in an endangered songbird

To cope with climate change, species may shift their distributions or adapt in situ to changing environmental conditions. However, clear examples of genetic changes via adaptation are limited. We explore evolutionary responses to climate change in the endangered southwestern willow flycatcher (Empidonax traillii extimus) through whole-genome comparisons between historical specimens, collected from
Authors
Sheela P. Turbek, Christen Bossu, Christine Rayne, Cristian Gruppi, Barbara E. Kus, Mary J. Whitfield, Thomas B. Smith, Eben H. Paxton, Rachael A. Bay, Kristen C Ruegg

Synthesis of larval lamprey responses to dewatering: State of the science, critical uncertainties, and management implications

ObjectiveDewatering of fine sediments in rivers and streams can kill many thousands of larval lampreys (order Petromyzontiformes) that are burrowed in these habitats. The larval life stage for lampreys lasts 3–10 years, and because larvae often aggregate in large numbers, negative impacts from dewatering could potentially deplete local populations and affect multiple year-classes. Larval lampreys
Authors
Theresa L. Liedtke, Julianne E. Harris, Monica R. Blanchard, Joseph J. Skalicky, Ann B. Grote

The Colorado River water crisis: Its origin and the future

During much of the 21st century, natural runoff in the Colorado River basin has declined, while consumption has remained relatively constant, leading to historically low reservoir storage. Between January 2000 and April 2023, the amount of water stored in Lake Mead and Lake Powell, the two largest reservoirs in the United States, declined by 33.5 million acre feet (41.3 billion cubic meters). As o
Authors
John C. Schmidt, Charles Yackulic, Eric Kuhn

Is chemical control for crayfish in hatchery fish shipments practical?

Invasive crayfish (family Cambaridae) displace native crayfish species and alter aquatic habitat, community structure, and ecosystem function. We evaluated whether chemical control can be a reliable control agent for crayfish to ensure that shipments from fish hatcheries did not result in new infestations of invasive crayfish. A series of acute (≤1 h) toxicity tests were conducted to evaluate the
Authors
Ann Allert, Daniel J. Westrich, David W. Whites, Katrina Knott, Nathan Storts, Robert J. DiStefano

Northwest Forest Plan — The first 25 years (1994–2018): Watershed condition status and trends

This report describes status and trends in watershed condition across the Northwest Forest Plan (NWFP) area over the first 25 years since its inception in 1994. The program charged with this task is the Aquatic and Riparian Effectiveness Monitoring Program (AREMP), which has assembled information from field data collection, spatial datasets, and a host of landscape models to evaluate the status an
Authors
Jason B. Dunham, Christine Hirsch, Sean Gordon, Rebecca L. Flitcroft, Nathan Chelgren, Marcía N. Snyder, David P Hockman-Wert, Gordon H. Reeves, Heidi V. Andersen, Scott K. Anderson, William A. Battaglin, Tom A. Black, Jason Brown, Shannon Claeson, Lauren Hay, Emily D. Heaston, Charles H. Luce, Nathan Nelson, Colin Penn, Mark Raggon