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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41763

Monitoring of wave, current, and sediment dynamics along the Chincoteague living shoreline, Virginia

Nature-based features, also called living shorelines, are increasingly applied in coastal protection and restoration. However, the processes and mechanisms (feedbacks and interactions) of wave attenuation, current velocity change, and sediment deposition and erosion along the living shoreline remain unclear, thus limiting the adaptive management of living shoreline restoration projects for coastal
Authors
Hongqing Wang, Q. Chen, Nan Wang, William D. Capurso, L.M. Niemoczynski, Ling Zhu, G.A. Snedden, Kevin S. Holcomb, Bowdoin W. Lusk, Carol W. Wilson, Sean R. Cornell

Data integration reveals dynamic and systematic patterns of breeding habitat use by a threatened shorebird

Incorporating species distributions into conservation planning has traditionally involved long-term representations of habitat use where temporal variation is averaged to reveal habitats that are most suitable across time. Advances in remote sensing and analytical tools have allowed for the integration of dynamic processes into species distribution modeling. Our objective was to develop a spatiote
Authors
Kristen S. Ellis, Michael J. Anteau, Garrett J. MacDonald, Rose J. Swift, Megan Ring, Dustin L. Toy, Mark H. Sherfy, Max Post van der Burg

Association of excessive precipitation and agricultural land use with honey bee colony performance

Context: From landscape variables to weather, multiple environmental factors affect honey bees and other pollinators. Detailed honey bee colony assessments in a variety of landscape and weather conditions offer the opportunity to develop a mechanistic understanding of how landscape composition, configuration, and weather are associated with colony nutrition, demography, and productivity.Objectives
Authors
Gabriela Quinlan, Rufus Isaacs, Clint R.V. Otto, Autumn H. Smart, Meghan O. Milbrath

Coupling large-spatial scale larval dispersal modelling with barcoding to refine the amphi-Atlantic connectivity hypothesis in deep-sea seep mussels

In highly fragmented and relatively stable cold-seep ecosystems, species are expected to exhibit high migration rates and long-distance dispersal of long-lived pelagic larvae to maintain genetic integrity over their range. Accordingly, several species inhabiting cold seeps are widely distributed across the whole Atlantic Ocean, with low genetic divergence between metapopulations on both sides of t
Authors
Elodie Portanier, A. Nicolle, W. Rath, L. Monnet, G. Le Goff, A.-S. Le Port, C. Daguin-Thiébaut, Cheryl Morrison, M.R. Cunha, M. Betters, Craig M. Young, Cindy L. Van Dover, A. Biastoch, E. Thiébaut, Didier Jollivet

Using neutral landscape models to evaluate the umbrella species concept in an ecotone

ContextSteep declines in North American rangeland biodiversity have prompted researchers and managers to use umbrella species as a tool to manage diverse suites of co-occurring wildlife, but efficacy of this method has been variable. Evaluation of prairie and shrubland grouse as umbrellas is typically restricted to observed overlap between umbrella and background species, but this approach does no
Authors
Courtney Duchardt, Adrian P. Monroe, David R. Edmunds, Matthew James Holloran, Alison G. Holloran, Cameron L. Aldridge

Inferring pathogen presence when sample misclassification and partial observation occur

Surveillance programmes are essential for detecting emerging pathogens and often rely on molecular methods to make inference about the presence of a target disease agent. However, molecular methods rarely detect target DNA perfectly. For example, molecular pathogen detection methods can result in misclassification (i.e. false positives and false negatives) or partial detection errors (i.e. detecti
Authors
Evan H. Campbell Grant, Riley O. Mummah, Brittany A. Mosher, Jonah Evans, Graziella Vittoria Direnzo

Model-based assessment and mapping of total phosphorus enrichment in rivers with sparse reference data

Water nutrient management efforts are frequently coordinated across thousands of water bodies, leading to a need for spatially extensive information to facilitate decision making. Here we explore potential applications of a machine learning model of river low-flow total phosphorus (TP) concentrations to support landscape nutrient management. The model was trained, validated, and then applied for a
Authors
Peter C. Esselman, R Jan Stevenson

Climate change and the global redistribution of biodiversity: Substantial variation in empirical support for expected range shifts

BackgroundAmong the most widely predicted climate change-related impacts to biodiversity are geographic range shifts, whereby species shift their spatial distribution to track their climate niches. A series of commonly articulated hypotheses have emerged in the scientific literature suggesting species are expected to shift their distributions to higher latitudes, greater elevations, and deeper dep
Authors
Madeleine A. Rubenstein, Sarah R. Weiskopf, Romain Bertrand, Shawn Carter, Lise Comte, Mitchell Eaton, Ciara G. Johnson, Jonathan Lenoir, Abigail Lynch, Brian W. Miller, Toni Lyn Morelli, Mari Angel Rodriguez, Adam Terando, Laura Thompson

Shorebird monitoring using spatially explicit occupancy and abundance

Loss of habitat and human disturbance are major factors in the worldwide decline of shorebird populations, including that of the threatened migratory piping plover (Charadrius melodus). From 2013 to 2018, we conducted land-based surveys of the shorebird community every other week during the peak piping plover season (September to March). We assessed the ability of a thin plate spline occupancy mod
Authors
Eve Bohnett, Jessica Schulz, Robert C. Dobbs, Thomas Hoctor, Dave Hulse, Bilal Ahmad, Wajid Rashid, Hardin Waddle

Effects of nitrate and conductivity on embryo-larval fathead minnows

Nitrate concentrations have been rising in surface waters over the last century and now frequently exceed drinking water standards and environmental safety benchmarks globally. Health-wise, these trends are concerning because nitrate has been shown to disrupt endocrine function and developmental outcomes. The present study investigated potential sublethal effects of nitrate on developing fathead m
Authors
Thea Margaret Edwards, Daniel J. Lamm, Joel J. Harvey

Demographics and gross pathology of scoters and scaups killed by the Cosco Busan oil spill in California

Unusual wildlife mortality events provide a unique opportunity to collect information on demographics, disease, and body condition in affected wildlife, which may be useful for informing oil spill damage assessments and future spill responses. In November 2007, the Cosco Busan Oil Spill occurred in San Francisco Bay, California, a globally important wintering area for waterfowl. The spill resulted
Authors
Jessie Beck, Ryan D. Carle, HannahRose M. Nevins, Susan E. W. De La Cruz, Erica Donnelly-Greenan

A simplified method for value of information using constructed scales

The value of information is a central concept in decision analysis, used to quantify how much the expected outcome of a decision would be improved if epistemic uncertainty could be resolved prior to committing to a course of action. One of the challenges, however, in quantitative analysis of the value of information is that the calculations are demanding, especially in requiring predictions of out
Authors
Michael C. Runge, Clark S. Rushing, James E. Lyons, Madeleine A. Rubenstein