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Publications

Browse more than 160,000 publications authored by our scientists over the past 100+ year history of the USGS.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.

Filter Total Items: 171126

Prion seeding activity in plant tissues detected by RT-QuIC

Prion diseases such as scrapie, bovine spongiform encephalopathy (BSE), and chronic wasting disease (CWD) affect domesticated and wild herbivorous mammals. Animals afflicted with CWD, the transmissible spongiform encephalopathy of cervids (deer, elk, and moose), shed prions into the environment, where they may persist and remain infectious for years. These environmental prions may remain in soil,
Authors
Kate Burgener, Stuart Siegfried Lichtenberg, Daniel P. Walsh, Heather Inzalaco, Aaron Lomax, Joel Pedersen

Viral pathogen detection in U.S. game-farm mallard (Anas platyrhynchos) flags spillover risk to wild birds

The threat posed by emerging infectious diseases is a major concern for global public health, animal health and food security, and the role of birds in transmission is increasingly under scrutiny. Each year, millions of mass-reared game-farm birds are released into the wild, presenting a unique and a poorly understood risk to wild and susceptible bird populations, and to human health. In particula
Authors
Brian P. Bourke, Robert J. Dusek, Koray Ergunay, Yvonne-Marie Linton, Serguei Vyacheslavovich Drovetski

Behavioral trade-offs and multitasking by elk in relation to predation risk from Mexican gray wolves

Predator non-consumptive effects (NCE) can alter prey foraging time and habitat use, potentially reducing fitness. Prey can mitigate NCEs by increasing vigilance, chewing-vigilance synchronization, and spatiotemporal avoidance of predators. We quantified the relationship between Mexican wolf (Canis lupus baileyi) predation risk and elk (Cervus canadensis) behavior. We conducted behavioral observat
Authors
Zachary J. Farley, Cara J. Thompson, Scott T. Boyle, Nicole M. Tatman, James W. Cain

Effects of drought and cloud-water interception on groundwater recharge and wildfire hazard for recent and future climate conditions, Kauaʻi, Oʻahu, Molokaʻi, Maui, and the Island of Hawaiʻi

The Water-budget Accounting for Tropical Regions Model (WATRMod) code was used for Kauaʻi, Oʻahu, Molokaʻi, Maui, and the Island of Hawaiʻi to estimate the spatial distribution of groundwater recharge, soil moisture, evapotranspiration, and climatic water deficit for a set of water-budget scenarios. The scenarios included historical and future drought conditions, and a land-cover condition where s
Authors
Alan Mair, Delwyn S. Oki, Heidi L. Kāne, Adam G. Johnson, Kolja Rotzoll

Impact of Hurricane Irma on coral reef sediment redistribution at Looe Key Reef, Florida, USA

Understanding event-driven sediment transport in coral reef environments is essential to assessing impacts on reef species, habitats, restoration, and mitigation, yet a global knowledge gap remains due to limited quantitative studies. Hurricane Irma made landfall in the Lower Florida Keys with sustained 209 km h−1 winds and waves greater than 8 m on 10 September 2017, directly impacting the Florid
Authors
Kimberly Yates, Zachery Fehr, Selena Anne-Marie Johnson, David G. Zawada

Estimated groundwater recharge for mid-century and end-of-century climate projections, Kaua‘i, O‘ahu, Moloka‘i, Lāna‘i, Maui, and the Island of Hawai‘i

Demand for freshwater in the State of Hawaiʻi is expected to increase by roughly 13 percent from 2020 to 2035. Groundwater availability in Hawaiʻi is affected by a number of factors, including land cover, rainfall, runoff, evapotranspiration, and climate change. To evaluate the availability of fresh groundwater under projected future-climate conditions, estimates of groundwater recharge are needed
Authors
Heidi L. Kāne, Alan Mair, Adam G. Johnson, Kolja Rotzoll, James Mifflin, Delwyn S. Oki

Best practices for genetic and genomic data archiving

Genetic and genomic data are collected for a vast array of scientific and applied purposes. Despite mandates for public archiving, data are typically used only by the generating authors. The reuse of genetic and genomic datasets remains uncommon because it is difficult, if not impossible, due to non-standard archiving practices and lack of contextual metadata. But as the new field of macrogenetics
Authors
Deborah M. Leigh, A. G. Vandergast, Maggie Hunter, Eric D. Crandall, W. Chris Funk, Colin J Garroway, Sean M. Hoban, Sara J. Oyler-McCance, Christian Rellstab, Gernot Segelbacher, Chloe Schmidt, Ella Vázquez-Domínguez, Ivan Paz-Vinas

Structural heterogeneity predicts ecological resistance and resilience to wildfire in arid shrublands

ContextDynamic feedbacks between physical structure and ecological function drive ecosystem productivity, resilience, and biodiversity maintenance. Detailed maps of canopy structure enable comprehensive evaluations of structure–function relationships. However, these relationships are scale-dependent, and identifying relevant spatial scales to link structure to function remains challenging.Objectiv
Authors
Andrii Zaiats, Megan E Cattau, David Pilliod, Rongsong Liu, Patricia Kaye T. Dumandan, Ahmad Hojatimalekshah, Donna M. Delparte, Trevor Caughlin

Testing megathrust rupture models using tsunami deposits

The 26 January 1700 CE Cascadia subduction zone earthquake ruptured much of the plate boundary and generated a tsunami that deposited sand in coastal marshes from northern California to Vancouver Island. Although the depositional record of tsunami inundation is extensive in some of these marshes, few sites have been investigated in enough detail to map the inland extent of sand deposition and depi
Authors
SeanPaul La Selle, Alan R. Nelson, Robert C. Witter, Bruce E. Jaffe, Guy Gelfenbaum, Jason Scott Padgett

Development of a hydrogeologic visualization model for western Sarpy County, Nebraska

Population in western Sarpy County, Nebraska, has steadily increased over the last several decades and has led to increased groundwater use for domestic purposes. To meet the increase in demand, the Papio-Missouri River Natural Resources District is seeking to use all available sources of groundwater in western Sarpy County. Additionally, elevated groundwater nitrate plus nitrite as nitrogen conce
Authors
Nathaniel J. Schaepe, Mikaela L. Cherry, Amanda T. Flynn, Christopher M. Hobza

Environmental DNA

The widespread adoption of environmental DNA (eDNA) detection tools for biodiversity monitoring has led to the need for universal data standards to inform principled eDNA data applications. Improvements in understanding the meaning and possible uncertainty of eDNA data can minimize erroneous conclusions, increase confidence in eDNA data, and maximize conservation outcomes. -Environmental DNA (eDN
Authors
Maggie Hunter, Kristian Meissner, Catherine Abbott, Florien Leese, Gernot Segelbacher

Milkweed and floral resource availability for monarch butterflies (Danaus plexippus) in the United States

The global decline of pollinators, particularly insects, underscores the importance of enhanced monitoring of their populations and habitats. However, monitoring some pollinator habitat is challenging due to widespread species distributions and shifts in habitat requirements through seasons and life stages. The monarch butterfly (Danaus plexippus), a migratory insect pollinator that breeds widely
Authors
Laura Lukens, Jennifer Thieme, Wayne E. Thogmartin