Software

USGS BiblioSearch is a python tool that performs literature searches across multiple citation databases via APIs or other web services in Python. The tool provides a quick method to query keywords and clean and compile results. Currently, the software includes methods to search four databases - Clarivate Web of Science, Elsevier Scopus, USGS Publications Warehouse, and USGS ScienceBase.

Tools for interacting with U.S. Geological Survey ScienceBase https://www.sciencebase.gov interfaces. ScienceBase is a data cataloging and collaborative data management platform. Functions included for querying ScienceBase, and creating and fetching datasets.

The covMRVAgen1 repository contains R (primarily), Mermaid, Perl, and Python language source code that can be used the construction of input tables of monthly groundwater levels (response variable) and predictor variables (covariates) for statistical modeling of water levels in the Mississippi River Valley alluvial aquifer within the Mississippi Alluvial Plain, south-central United States. The sou

National Seismic Hazard Model (NSHM) for the conterminous U.S. This model is intended for use with U.S. Geological Survey (USGS) hazard software nshmp-haz. This model was last updated in 2018.

National Seismic Hazard Model (NSHM) for the State of Hawaii. This model is intended for use with U.S. Geological Survey (USGS) hazard software nshmp-haz.

U.S. Geological Survey (USGS) National Seismic Hazard Model Project (NSHMP) codes for performing probabilistic seismic hazard (PSHA) and related analyses. These codes are intended for use with seismic hazard models developed by the NSHMP for the U.S. and its territories. This project includes a variety of command line applications and web service classes and relies on the nshmp-lib hazard library,

nshmp-lib is a USGS developed Java library that supports probabilistic seismic hazard (PSHA) and related analyses. This project includes all the code required to load, process and query USGS National Seismic Hazard Models (NSHMs). nshmp-lib is used by command line applications and web services found in the nshmp-haz project. See that project for running PSHA calculations.

R-based script used to simulate patterns of co-occurrence among two hypothetical species under patterns of avoidance, aggregation, and independence when the closure assumption is met or not, analyze simulated patterns with two-species occupancy models, and summarize the results.

The ToxMixtures R-package includes a set of functions to analyze, visualize, and organize measured chemical concentration data as it relates to chemical mixtures. ToxMixtures combines outputs from the R-package toxEval with open access sources on molecular biology to provide information on potential biological effects of chemicals detected in environmental matrices. To use ToxMixtures, the user wi

The culvert analysis program (CAP) version 2021 updates and corrects know errors in standalone versions 98-07c or earlier and iRIC version 3.X or earlier.

Model Viewer, a graphical user interface for three-dimensional visualization of ground-water results, has been updated to support reading the results from the U.S. Geological Survey’s MODFLOW 6 program. Two examples are included. The example ex-gwf-csub-p04 illustrates the use of the new DIS6 grid format. The second example ex-gwf-disvmesh demonstrates the ability to load and display the DISV6

GSFLOW is a coupled Groundwater and Surface-Water Flow model based on the integration of the U.S. Geological Survey Precipitation-Runoff Modeling System (PRMS; Markstrom and others, 2015) and the U.S. Geological Survey Modular Groundwater Flow Model (MODFLOW-2005, Harbaugh, 2005; MODFLOW-NWT, Niswonger and others, 2011). In addition to the basic PRMS and MODFLOW simulation methods, several additio