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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

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Fomites could determine severity of SARS-CoV-2 outbreaks in low-density white-tailed deer (Odocoileus virginianus) populations Fomites could determine severity of SARS-CoV-2 outbreaks in low-density white-tailed deer (Odocoileus virginianus) populations

The establishment of a reservoir species for zoonotic diseases is concerning for both animal and human health. Severe acute respiratory syndrome coronavirus (SARS-CoV)-2, the coronavirus responsible for the COVID-19 pandemic, has been detected in white-tailed deer (Odocoileus virginianus) in the United States. Since its initial detection, various studies have documented circulation and...
Authors
Elias Rosenblatt, Jonathan D. Cook, Graziella Vittoria DiRenzo, Evan H. Campbell Grant, Michael C. Runge, Brittany Mosher

On the importance and practical conservation of nongame fishes. On the importance and practical conservation of nongame fishes.

Fisheries management has historically focused conservation efforts on game or sport species. However, most species are nongame—those not traditionally captured for sport or harvest in countries where recreational fisheries predominate. Greater conservation of nongame species could help ensure that population declines do not go unnoticed. Unfortunately, fisheries managers already manage...
Authors
Niall G. Clancy, Frank J. Rahel, Brandon K. Peoples, Annika W. Walters, John Lyons, Nicholas E. Mandrak, Phaedra E. Budy, Emmanuel A Frimpong, Wyatt F. Cross

Coexistence beyond disciplinary silos: Five dimensions of analysis for more convivial human-predator interactions Coexistence beyond disciplinary silos: Five dimensions of analysis for more convivial human-predator interactions

Understanding human-predator interactions has been a central goal of conservation for decades, yet many previous efforts have approached this challenge from disciplinary perspectives focused on single case studies. There is a need for more transdisciplinary and multi-sited research to enrich our understandings of the complexity of human-nonhuman interactions and to design ways to make...
Authors
Judith E. Krauss, Valentina Fiasco, Silvio Marchini, Michael McInturff, Laila T. Sandroni, Peter S. Alagona, Dan Brockington, Bram Büscher, Rosaleen Duffy, Katia Maria P.M. de Barros Ferraz, Rob Fletcher, Wilhelm Andrew Kiwango, Sanna Komi, Mathew Bukhi Mabele, Kate Massarella, Anja Nygren

Histological progression and bacterial load dynamics of Renibacterium salmoninarum in Chinook salmon Oncorhynchus tshawytscha Histological progression and bacterial load dynamics of Renibacterium salmoninarum in Chinook salmon Oncorhynchus tshawytscha

Renibacterium salmoninarum, the cause of bacterial kidney disease (BKD), severely impacts salmonid populations. Much of our understanding of the BKD pathology in salmonids comes from evaluating fatal infections in wild populations or spawning Pacific Northwest salmonids. Our study investigated the histological progression and bacterial load dynamics of R. salmoninarum infection in...
Authors
Riley E. Dils, Tawni B.R. Firestone, Paula A. Schaffer, Dana L. Winkelman, Eric R. Fetherman

Serological assessment of pathogen exposure among desert bighorn sheep in southwestern Arizona Serological assessment of pathogen exposure among desert bighorn sheep in southwestern Arizona

Bighorn sheep (Ovis canadensis) are influenced by infectious diseases. Although Mycoplasma ovipneumoniae has been the main focus of bighorn sheep managers since early 2010, other pathogens may also influence bighorn sheep populations. We sampled desert bighorn sheep (Ovis canadensis mexicana) captured for a study on the Cabeza Prieta National Wildlife Refuge in southwestern Arizona, USA...
Authors
Colton J. Padilla, James W. Cain, Matthew E. Gompper, Paul R. Krausman, JIM Devos

Characterization of the long-distance dispersal kernel of white-tailed deer and evaluating its impact on chronic wasting disease spread in Wisconsin Characterization of the long-distance dispersal kernel of white-tailed deer and evaluating its impact on chronic wasting disease spread in Wisconsin

Chronic wasting disease (CWD) is a fatal neurodegenerative disease infecting cervids. It is highly contagious and caused by misfolded prions that propagate via templated conformational conversion of the cervid’s normal prion protein. Prevalence of CWD in free-ranging deer in North America is mostly low, but in some regions local prevalence has reached 80%. CWD prions can be transmitted...
Authors
Gouda V. Mennatallah, Jim Powell, Jen McClure, Daniel P. Walsh, Daniel J. Storm

Rapid recovery of an arctic lake ecosystem from a pulse disturbance caused by thermokarst failure Rapid recovery of an arctic lake ecosystem from a pulse disturbance caused by thermokarst failure

Due to rapid climate change, arctic ecosystems are experiencing an increase in disturbances including localized land-surface failures caused by melting ground ice (thermokarst failures). These failures result in the mass transport of sediment and organic materials into surface waters, with the potential to dramatically alter aquatic ecosystem function and biotic interactions. We coupled...
Authors
Phaedra E. Budy, Casey A. Pennock, Sarah Messenger, Hunter Pehrson, Emily Adler, Gary P. Thiede, Natasha R. Christman, Byron C. Crump, Anne E. Giblin, George W. Kling

Antigone canadensis (Sandhill Crane) foraging patterns influenced by crop type, roost distance, and tillage intensity during spring and autumn migration at a primary stopover area Antigone canadensis (Sandhill Crane) foraging patterns influenced by crop type, roost distance, and tillage intensity during spring and autumn migration at a primary stopover area

The San Luis Valley in Colorado, USA, an agriculturally dominated stopover area, is used by the Rocky Mountain population of Antigone canadensis tabida (Greater Sandhill Crane) and some midcontinental individuals of A. c. canadensis (Lesser Sandhill Crane) during migration. While the numbers of both subspecies are stable, the effects of continued water scarcity and declines in grain...
Authors
Rachel A. Vanausdall, William L. Kendall, Daniel P. Collins

Learning complex spatial dynamics of wildlife diseases with machine learning-guided partial differential equations Learning complex spatial dynamics of wildlife diseases with machine learning-guided partial differential equations

Emerging wildlife pathogens often display geographic variability due to landscape heterogeneity. Modeling approaches capable of learning complex, non-linear spatial dynamics of diseases are needed to rigorously assess and mitigate the effects of pathogens on wildlife health and biodiversity. We propose a novel machine learning (ML)-guided approach that leverages prior physical knowledge...
Authors
Juan Francisco Mandujano Reyes, Gina Oh, Ian McGahan, Ting Fung Ma, Robin Russell, Daniel P. Walsh, Jun Zhu

Leveraging detection uncertainty to estimate Renibacterium salmoninarum infection status among multiple tissues and assays Leveraging detection uncertainty to estimate Renibacterium salmoninarum infection status among multiple tissues and assays

Effective disease surveillance relies on accurate pathogen testing and robust prevalence estimates. Diagnostic specificity (DSp), the probability that an uninfected animal tests negative, is high when false positives are low. Diagnostic sensitivity (DSe) is the probability an infected animal tests positive; higher DSe means fewer false negatives. However, sensitivity and false negatives...
Authors
Tawni B.R. Firestone, Eric R. Fetherman, Kathryn P. Huyvaert, John D. Drennan, Rebecca E. Brock, Brooke Yeatts, Dana L. Winkelman

Long-term patterns in growth of White Sturgeon in the Sacramento-San Joaquin River basin, California. Long-term patterns in growth of White Sturgeon in the Sacramento-San Joaquin River basin, California.

Introduction: The Sacramento-San Joaquin River system (SSJ) of California includes both riverine, delta, and estuarine habitats and is among the most modified aquatic ecosystems in the United States. Water development projects in the system are associated with declines of many native species, including White Sturgeon Acipenser transmontanus.Methods: We used White Sturgeon pectoral fin...
Authors
Michael Quist, Shannon Blackburn, Marta Ulaski, Zachary Jackson

Modeling lamprey distribution using flow, geomorphology, and elevation in a terminal lake system Modeling lamprey distribution using flow, geomorphology, and elevation in a terminal lake system

ObjectiveLampreys are an ecologically important group of fishes. Several species are imperiled and lack key distribution and habitat data. The terminal Goose Lake Basin, U.S.A. is home to two such species, the Goose Lake Lamprey, Entosphenus sp. (formally undescribed), and the Pit-Klamath Brook Lamprey, E. lethophagus. Species distribution models (SDMs) are useful for identifying key...
Authors
Jacob C. Dickey, Benjamin J. Clemens, Michael Dumelle, Melanie J. Davis
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