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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 3984

Managing for RADical ecosystem change: Applying the Resist-Accept-Direct (RAD) framework

Ecosystem transformation involves the emergence of persistent ecological or social–ecological systems that diverge, dramatically and irreversibly, from prior ecosystem structure and function. Such transformations are occurring at increasing rates across the planet in response to changes in climate, land use, and other factors. Consequently, a dynamic view of ecosystem processes that accommodates r
Authors
Abigail Lynch, Laura Thompson, Erik A. Beever, Augustin C. Engman, Cat Hawkins Hoffman, Stephen T. Jackson, Trevor J. Krabbenhoft, David J Lawrence, Douglas Limpinsel, Robert T. Magill, Tracy Melvin, John M. Morton, Robert Newman, Jay Peterson, Mark T. Porath, Frank J. Rahel, Gregor Schuurman, Suresh Sethi, Jennifer L. Wilkening

Juvenile moose stress and nutrition dynamics related to winter ticks, landscape characteristics, climate-mediated factors and survival

Moose populations in the northeastern United States have declined over the past 15 years, primarily due to the impacts of winter ticks. Research efforts have focused on the effects of winter tick infestation on moose survival and reproduction, but stress and nutritional responses to ticks and other stressors remain understudied. We examined the influence of several environmental factors on moose c
Authors
Elias Rosenblatt, Jacob Debow, Joshua Blouin, Therese M. Donovan, James Murdoch, Scott Creel, Will Rogers, Katherina Gieder, Nick Fortin, Cedric Alexander

Vulnerability of Pacific salmon to invasion of northern pike (Esox lucius) in Southcentral Alaska

The relentless role of invasive species in the extinction of native biota requires predictions of ecosystem vulnerability to inform proactive management strategies. The worldwide invasion and range expansion of predatory northern pike (Esox lucius) has been linked to the decline of native fishes and tools are needed to predict the vulnerability of habitats to invasion over broad geographic scales.
Authors
Chase S. Jalbert, Jeffrey A. Falke, Andrés López, Kristine J. Dunker, Adam Sepulveda, Peter A. H. Westley

Context-dependent deep learning

Explicitly representing an agent’s context has been shown to have many benefits, which should also apply to machine learning. In this paper, we describe an approach to do this called context-dependent deep learning (CDDL), which is based on earlier work in context-mediated behavior (CMB) that uses contextual schemas (c-schemas) to represent clas-ses of situations along with knowledge useful in the
Authors
Roy M. Turner, Cyndy Loftin, Alex Revello, Logan R. Kline, Meredith Lewis, Salimeh Yasai–Sekeh

Development of aquaculture protocols and gonadal differentiation of red shiner

Developing detailed rearing methods and describing the onset of gonadal differentiation in Red Shiners Cyprinella lutrensis could facilitate the development of novel techniques to control or enhance populations, enable toxicology studies, and help construct bioassays. In this study, we develop and report aquaculture practices for Red Shiner that ensure consistent year-round production in laborator
Authors
Chad N. Teal, Daniel J. Schill, Susan B. Fogelson, Scott A. Bonar

Using landscape metrics to characterize towns along an urban-rural gradient

ContextUrban-rural gradients are useful tools when examining the influence of human disturbances on ecological, social and coupled systems, yet the most commonly used gradient definitions are based on single broad measures such as housing density or percent forest cover that fail to capture landscape patterns important for conservation.ObjectivesWe present an approach to defining urban–rural gradi
Authors
Abigail R. Kaminski, Dana Marie Bauer, Kathleen P. Bell, Cyndy Loftin, Erik Nelson

Fragmentation and streamflow metrics drive prairie chub (Macrhybopsis australis) occurrence in the upper Red River basin

Dam construction threatens global aquatic biodiversity by fragmenting stream networks and altering flow regimes. The negative effects of dams are exacerbated by increased drought periods and associated water withdrawals, especially in semi-arid regions. Stream fishes are particularly threatened owing to their mobile nature and requirement for multiple habitats to complete their life cycles. An und
Authors
R. Mollenhauer, Shannon K. Brewer, J.S. Perkin, D. Swedberg, M. Wedgeworth, Z.D. Steffensmeier

Factors affecting staff support of a voluntary nonlead ammunition outreach program

Lead poisoning from ingestion of bullet fragments in gut piles and unretrieved deer carcasses continues to cause mortality in bald eagles. To address this issue, the Midwest region of the U.S. Fish and Wildlife Service (USFWS) initiated an outreach program during 2016–2018 encouraging hunters to voluntarily use nonlead ammunition while deer hunting on National Wildlife Refuges (NWRs). We conducted
Authors
J. H. Schulz, S. A. Wilhelm Stanis, Christine Jie Li, Mark Morgan, Elisabeth B. Webb

Proposed standard weight (Ws) equation and length categories for Utah Chub

Condition indices, such as relative weight (Wr), provide a simple method for comparing length–weight relationships among populations. However, no standard weight (Ws) equation has been developed for Utah Chub Gila atraria, a species of important management focus in the Intermountain West. We obtained length–weight data for 30,541 Utah Chub from 24 populations in Idaho, Montana, Utah, and Wyoming.
Authors
Aaron Black, Zach Beard, Jon Flinders, Michael Quist

Relative effectiveness of D-Frame dip nets, quatrefoil light traps, and towed ichthyoplankton nets for larval Muskellunge

Muskellunge Esox masquinongy are large, predatory game fish whose association with shallow, complex habitats is well documented, particularly during early life stages. Despite this association, relatively little guidance exists regarding effective sampling of Muskellunge larvae and previous efforts to sample larval Muskellunge have been met with limited success. Therefore, our objective was to det
Authors
Jared E. Krebs, Ethan J. Brandt, Daniel J. Dembkowski, Daniel A. Isermann

Maintenance of nest quality in Adélie penguins Pygoscelis adeliae: An additional benefit to life in the center

In colonial seabirds, differences in the nesting or fledging success have been associated with differences in nest position within the breeding aggregation (subcolony): less successful nests are located on the periphery, with more successful nests closer to the center. For Pygoscelid penguins, central nests tend to be larger, with nest size being an indicator of individual quality because stones m
Authors
Virginia Morandini, Katie Dugger, Amélie Lescroël, Annie Schmidt, Grant Ballard

Ecological engineering with oysters enhances coastal resilience efforts

Coastal areas are especially vulnerable to habitat loss, sea-level rise, and other climate change effects. Oyster-dominated eco-engineered reefs have been promoted as integral components of engineered habitats enhancing coastal resilience through provision of numerous ecological, morphological, and socio-economic services. However, the assessed ‘success’ of these eco-engineered oyster reefs remain
Authors
M. S. N. Chowdhury, Megan K. La Peyre, L. D. Coen, R. L. Morris, M. W. Luckenbach, T. Ysebaert, B. Walles, A. C. Smaal