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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 3984

Habitat associations and distributions of two endemic crayfishes, Cambarus (Erebicambarus) maculatus Hobbs & Pflieger, 1988 and Faxonius (Billecambarus) harrisonii (Faxon, 1884) (Decapoda: Astacoidea: Cambaridae), in the Meramec River drainage, Missouri,

Understanding the habitat associations and distributions of rare species is important to inform management and policy decisions. Cambarus (Erebicambarus) maculatus  Hobbs & Pflieger, 1988, the freckled crayfish, and Faxonius (Billecambarus) harrisonii (Faxon, 1884), the belted crayfish, are two of Missouri’s endemic crayfish species. Both species are listed as Vulnerable (S3) on Missouri’s Species
Authors
J. Chilton, Amanda E. Rosenberger, Robert J. DiStefano

Using reproductive potential to assess oyster population sustainability

Ensuring that oysters remain sustainable in the face of significant coastal restoration activities, high local subsidence rates, and predicted sea-level rise requires a deeper understanding of basic population demographics, including reproductive potential. We quantified fecundity (eggs ind−1) of oysters at high- and low-salinity sites during a fall and spring spawn season. We assessed the relatio
Authors
Danielle A. Marshall, Samuel C. Moore, Malinda Sutor, Jerome F. La Peyre, Megan La Peyre

Estimating the drivers of species distributions with opportunistic data using mediation analysis

Ecological occupancy modeling has historically relied on high-quality, low-quantity designed-survey data for estimation and prediction. In recent years, there has been a large increase in the amount of high-quantity, unknown-quality opportunistic data. This has motivated research on how best to combine these two data sources in order to optimize inference. Existing methods can be infeasible for la
Authors
D. B. Huberman, B. J. Reich, Krishna Pacifici, Jaime A. Collazo

Keeping it classy: Classification of live fish and ghost PIT tags detected with a mobile PIT tag interrogation system using an innovative analytical approach

The ability of passive integrated transponder (PIT) tag data to improve demographic parameter estimates has led to the rapid advancement of PIT tag systems. However, ghost tags create uncertainty about detected tag status (i.e., live fish or ghost tag) when using mobile interrogation systems. We developed a method to differentiate between live fish and ghost tags using a random forest classificati
Authors
J. Benjamin Stout, Mary Conner, Phaedra E. Budy, Peter Mackinnon, Mark McKinstry

Using a bayesian multistate occupancy model to assess seabird and shorebird status in Glacier Bay, Alaska

The U.S. Department of Interior National Park Service is charged with both monitoring avian communities and evaluating the influence of visitors to National Parks on sensitive species; however, this task is challenging considering that sampling programs often involve multiple species, each with differing behavior, habitat requirements, and detectability. Our objectives were to build a model to des
Authors
Steven L. Whitlock, Tania Lewis, James Peterson

Model-based clustering reveals patterns in central place use of a marine top predator

Satellite telemetry data are commonly used to quantify habitat selection, examine animal movements, and delineate home ranges. These data also contain valuable information concerning dens, nests, roosts, and other central places that are often associated with important life history events and may exhibit unique characteristics; however, using satellite telemetry data to study central places is com
Authors
Brian M. Brost, Mevin Hooten, Robert J. Small

Improved understanding and prediction of freshwater fish communities through the use of joint species distribution models

Two primary goals in fisheries research are to (i) understand how habitat and environmental conditions influence the distribution of fishes across the landscape and (ii) make predictions about how fish communities will respond to environmental and anthropogenic change. In inland, freshwater ecosystems, quantitative approaches traditionally used to accomplish these goals largely ignore the effects
Authors
Tyler Wagner, Gretchen J.A. Hansen, Erin Schliep, Bethany Bethke, Andrew Honsey, Peter Jacobson, Benjamen C. Kline, Shannon L. White

Yellowstone Lake ecosystem restoration: A case study for invasive fish management

Invasive predatory lake trout Salvelinus namaycush were discovered in Yellowstone Lake in 1994 and caused a precipitous decrease in abundance of native Yellowstone cutthroat trout Oncorhynchus clarkii bouvieri. Suppression efforts (primarily gillnetting) initiated in 1995 did not curtail lake trout population growth or lakewide expansion. An adaptive management strategy was developed in 2010 that
Authors
Todd M. Koel, Jeffrey L. Arnold, Patricia E. Bigelow, Travis O. Brenden, Jeffery D. Davis, Colleen R. Detjens, Philip D. Doepke, Brian D. Ertel, Hayley C. Glassic, Robert E. Gresswell, Christopher S Guy, Drew J. MacDonald, Michael E. Ruhl, Todd J. Stuth, David P. Sweet, John M. Syslo, Nathan A. Thomas, Lusha M. Tronstad, Patrick J. White, Alexander V. Zale

Drought reshuffles plant phenology and reduces the foraging benefit of green-wave surfing for a migratory ungulate

To increase resource gain, many herbivores pace their migration with the flush of nutritious plant green-up that progresses across the landscape (termed “green-wave surfing”). Despite concerns about the effects of climate change on migratory species and the critical role of plant phenology in mediating the ability of ungulates to surf, little is known about how drought shapes the green wave and in
Authors
Ellen O. Aikens, Kevin L. Monteith, Jerod A. Merkle, Samantha P. H. Dwinnell, Gary L. Fralick, Matthew Kauffman

Remarkable response of native fishes to invasive trout suppression varies with trout density, temperature, and annual hydrology

Recovery of imperiled fishes can be achieved through suppression of invasives, but outcomes may vary with environmental conditions. We studied the response of imperiled desert fishes to an invasive brown (Salmo trutta) and rainbow trout (Oncorhynchus mykiss) suppression program in a Colorado River tributary, with natural flow and longitudinal variation in thermal characteristics. We investigated t
Authors
Brian D Healy, Robert Schelly, Charles Yackulic, Emily Omana Smith, Phaedra E. Budy

Granular measures of agricultural land use influence lake nitrogen and phosphorus differently at macroscales

Agricultural land use is typically associated with high stream nutrient concentrations and increased nutrient loading to lakes. For lakes, evidence for these associations mostly comes from studies on individual lakes or watersheds that relate concentrations of nitrogen (N) or phosphorus (P) to aggregate measures of agricultural land use, such as the proportion of land used for agriculture in a lak
Authors
Jemma Stachelek, W. Weng, C. C. Carey, A. R. Kemanian, K. M. Cobourn, Tyler Wagner, K. C. Weathers, P. A. Soranno

Panmixia in a sea ice-associated marine mammal: evaluating genetic structure of the Pacific walrus (Odobenus rosmarus divergens) at multiple spatial scales

The kin structure of a species at relatively fine spatial scales impacts broad-scale patterns in genetic structure at the population level. However, kin structure rarely has been elucidated for migratory marine mammals. The Pacific walrus (Odobenus rosmarus divergens) exhibits migratory behavior linked to seasonal patterns in sea ice dynamics. Consequently, information on the spatial genetic struc
Authors
William S. Beatty, Patrick R. Lemons, Suresh Sethi, Jason Everett, Cara J. Lewis, Robert J. Lynn, Geoffrey M. Cook, Joel L. Garlich-Miller, John K. Wenburg