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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 3984

Organic pellet decomposition induces mortality of Lake Trout embryos in Yellowstone Lake

Yellowstone Lake is the site of actions to suppress invasive Lake Trout Salvelinus namaycush and restore native Yellowstone Cutthroat Trout Oncorhynchus clarkii bouvieri and natural ecosystem function. Although gill netting is effective (Lake Trout λ ≤ 0.6 from 2012 through 2018), the effort costs more than US$2 million annually and only targets Lake Trout age 2 and older. To increase suppression
Authors
Todd M. Koel, Nathan A. Thomas, Christopher S. Guy, Philip D. Doepke, Drew J. MacDonald, Alex S. Poole, Wendy M. Sealey, Alexander V. Zale

Morphological identification of Bighead Carp, Silver Carp, and Grass Carp eggs using random forests machine learning classification

Visual identification of fish eggs is difficult and unreliable due to a lack of information on the morphological egg characteristics of many species. We used random forests machine learning to predict the identity of genetically identified Bighead Carp Hypophthalmichthys nobilis, Grass Carp Ctenopharyngodon idella, and Silver Carp H. molitrix eggs based on egg morphometric and environmental charac
Authors
Carlos A. Camacho, Christopher J. Sullivan, Michael J. Weber, Clay Pierce

Evaluating the effects of barriers on Slimy Sculpin movement and population connectivity using novel sibship-based and traditional genetic metrics

Population genetics-based approaches can provide robust and cost-effective ways to assess the effects of potential barriers, including dams and road-stream crossings, on the passage and population connectivity of aquatic organisms. Determining the best way to apply and modify genetic tools for different species and situations is essential for making these genetics-based approaches broadly applicab
Authors
Spencer Y. Weinstein, Jason A. Coombs, Keith H. Nislow, Chris Riley, Allison H. Roy, Andrew R. Whiteley

Nest survival of Black-necked Stilts (Himantopus mexicanus) on the upper Texas coast, USA

The Black-necked Stilt (Himantopus mexicanus) is a migratory shorebird of temperate and tropical America. Declining wetland quality and associated declines in hydrological integrity may contribute to widespread habitat loss for stilts nesting on the upper Texas Gulf of Mexico coast of the USA, as both fresh and brackish marshes are converting to open water and saline marsh. Nests (n = 356) were mo
Authors
Thomas V. Riecke, Warren C. Conway, David A. Haukos, Jena A. Moon, Christopher E. Comer

A mechanistic understanding of ecological responses to land-use change in headwater streams

Anthropogenic activities, such as oil and natural gas development (ONGD), have significantly altered the landscape. It is often challenging to identify the mechanistic processes underlying ecological responses to land-use change (LUC). In aquatic ecosystems, alterations to habitat and food availability and water quality associated with increased LUC are key mechanistic pathways that deserve manage
Authors
Richard H. Walker, Annika W. Walters

Oyster reefs in northern Gulf of Mexico estuaries harbor diverse fish and decapod crustacean assemblages: A meta-synthesis

Oyster reefs provide habitat for numerous fish and decapod crustacean species that mediate ecosystem functioning and support vibrant fisheries. Recent focus on the restoration of eastern oyster (Crassostrea virginica) reefs stems from this role as a critical ecosystem engineer. Within the shallow estuaries of the northern Gulf of Mexico (nGoM), the eastern oyster is the dominant reef building orga
Authors
Megan K. LaPeyre, D. A. Marshall, L. S. Miller, A. T. Humphries

Riverine turtles select habitats maintained by natural discharge regimes in an unimpounded large river

Turtle populations are imperiled worldwide, but limited ecological information from unaltered systems hampers science‐based management and conservation of some species, especially riverine turtles such as the spiny softshell (Apalone spinifera). We therefore investigated movements and spatial habitat selection of 54 A. spinifera in 633 river kilometres (rkm) of the least‐altered river in the conte
Authors
Brian J. Tornabene, Matthew E. Jaeger, Robert G. Bramblett, Mark Nelson, Nathan McClenning, Trevor Watson, Alan Ankrum, Kenneth Frazer, Ann Marie Reinhold, Alexander V. Zale

Application of a regional climate model to assess changes in the climatology of the Eastern US and Cuba associated with historic landcover change

We examine the annual, seasonal, monthly, and diurnal climate responses to the land use change (LUC) in eastern United States and Cuba during four epochs (1650, 1850, 1920, and 1992) with ensemble simulations conducted with the RegCM4 regional climate model that includes the Biosphere Atmosphere Transfer Scheme (BATS1e) surface physics package (Dickinson et al., 1993). We derived the land use (LU)
Authors
Steven W. Hostetler, R Reker, Jay R. Alder, Thomas Loveland, Debra A. Willard, Christopher E. Bernhardt, Eric T. Sundquist, Renee L. Thompson

Do parents synchronise nest visits as an antipredator adaptation in birds of New Zealand and Tasmania?

Birds with altricial offspring need to feed them regularly, but each feeding visit risks drawing attention to the nest and revealing its location to potential predators. Synchronisation of visits by both parents has been suggested as a behavioural adaptation to reduce the risk of nest predation. Under this hypothesis, higher risk of nest predation favours greater synchrony of parental feeding visi
Authors
Nyil Khwaja, Melanie Massaro, Thomas E. Martin, James V. Briskie

Identifying important military installations for continental-scale conservation of marsh bird breeding habitat

Degradation of wetland ecosystems has negatively impacted many species, perhaps none more so than marsh birds that breed in vegetative emergent wetlands throughout North America. The U.S. Department of Defense manages approximately 29 million acres of land within the continental U.S., and many military installations contain wetland complexes that may be important for wetland birds. Thus, failure t
Authors
Bryan S. Stevens, Courtney J. Conway

Foraging ecology mediates response to ecological mismatch during migratory stopover

Impacts of ecological mismatches should be most pronounced at points of the annual cycle when populations depend on a predictable, abundant, and aggregated food resource that changes in timing or distribution. The degree to which species specialize on a key prey item, therefore, should determine their sensitivity to mismatches. We evaluated the hypothesis that the effects of ecological mismatch du
Authors
A. M. Tucker, Conor P. McGowan, M. Catalano, A. Derose-Wilson, R. A. Robinson, J. Zimmerman

Pathogen prevalence in American black bears (Ursus americanus) of the Jemez Mountains, New Mexico, USA

Informed management of American black bears (Ursus americanus) requires knowledge of the distribution and pathology of diseases affecting the species. Little information is available on pathogen prevalence from black bear populations in the Southwest, US, and it is unknown how these infections may influence black bear populations or disease transmission. We captured New Mexico black bears (Ursus a
Authors
Susan M. Bard, James W. Cain