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Publications

Browse more than 160,000 publications authored by our scientists over the past 100+ year history of the USGS.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more.

Filter Total Items: 171223

A 37 K SNP array for the management and conservation of Golden Eagles (Aquila chrysaetos)

We describe the development of a custom 37 K Affymetrix Axiom myDesign single nucleotide polymorphism (SNP) array for a culturally and ecologically important apex predator, the golden eagle (Aquila chrysaetos). Using this SNP array, we performed population genomic analysis on 154 individuals of known natal localities and detected three genetic clusters that we designated as Taiga/High Arctic, Grea
Authors
Megan E. Judkins, Gary W. Roemer, Brian Millsap, Joseph G. Barnes, Bryan E. Bedrosian, Stephen L. Clarke, Robert Domenech, Garth Herring, Myles Lamont, Brian W. Smith, Dale W. Stahlecker, Matthew J. Stuber, Wesley C. Warren, Ronald A. Van Den Bussche

Ferruginous Hawk movements respond predictably to intra-annual variation but unexpectedly to anthropogenic habitats

Birds exhibit flexible movement responses to environmental variation across the annual cycle, and those responses can provide insight into potential impacts that environmental changes may have on these species. To understand year-round variation in space use by Ferruginous Hawks Buteo regalis, we tracked 12 birds breeding in southwestern Idaho, USA, using GPS telemetry collected over 207 bird-mont
Authors
Georgia H. Isted, Robert J. Thomas, Kevin S. Warner, Matthew J. Stuber, Ethan A. Ellsworth, Todd E. Katzner

Plague mitigation for prairie dog and black-footed ferret conservation: Degree and duration of flea control with 0.005% fipronil grain bait

Sylvatic plague, a primarily flea-borne zoonosis, is a significant threat to prairie dogs (Cynomys spp., PDs) and their specialized predators, endangered black-footed ferrets (Mustela nigripes, BFFs). Host-fed fipronil baits have proven effective in controlling fleas on PDs for the purposes of plague mitigation and BFF conservation. Currently, annual treatments are the norm. We tested the long-ter
Authors
David A. Eads, Travis. Livieri, Phillip Dobesh, John P. Hughes, Jason Fly, Holly Redmond, Eddie Childers, Matthew S. Schwarz, Dean E. Biggins

Establishing an in vitro model to assess the toxicity of 6PPD-quinone and other tire wear transformation products

The tire wear transformation product 6PPD-quinone (6PPDQ) has been implicated as the causative factor for broad scale mortality events for coho salmon in the Pacific Northwest. Highly variable sensitivity to 6PPDQ in closely related salmonids complicates efforts to evaluate the broader toxicological impacts to aquatic ecosystems. Our goals were to (1) validate the large range of in vivo species se
Authors
Justin Blaine Greer, Ellie Maureen Dalsky, Rachael F. Lane, John Hansen

Tree symbioses sustain nitrogen fixation despite excess nitrogen supply

Symbiotic nitrogen fixation (SNF) is a key ecological process whose impact depends on the strategy of SNF regulation—the degree to which rates of SNF change in response to limitation by N versus other resources. SNF that is obligate or exhibits incomplete downregulation can result in excess N fixation, whereas a facultative SNF strategy does not. We hypothesized that tree-based SNF strategies diff
Authors
Duncan N.L. Menge, Amelia A. Wolf, Jennifer L. Funk, Steven Perakis, Palani R. Akana, Rachel Arkebauer, Thomas A. Bytnerowicz, K. A. Carreras Pereira, Alexandra M. Huddell, Sian Kou-Giesbrecht, Sarah K. Ortiz

Is now the time? Review of genetic rescue as a conservation tool for brook trout

Brook trout populations have been declining throughout their native range in the east coast of the United States. Many populations are now distributed in small, isolated habitat patches where low genetic diversity and high rates of inbreeding reduce contemporary viability and long-term adaptive potential. Although human-assisted gene flow could theoretically improve conservation outcomes through g
Authors
Shannon L. White, Jacob M Rash, David C. Kazyak

The truth is in the stream: Use of tracer techniques and synoptic sampling to evaluate metal loading and remedial options in a hydrologically complex setting

Two synoptic sampling campaigns were conducted to quantify metal loading to Illinois Gulch, a small stream affected by historical mining activities. The first campaign was designed to determine the degree to which Illinois Gulch loses water to the underlying mine workings, and to determine the effect of these losses on observed metal loads. The second campaign was designed to evaluate metal loadin
Authors
Robert L. Runkel, Philip Verplanck, Katherine Walton-Day, R. Blaine McCleskey, Patrick Byrne

Application of habitat association models across regions: Useful explanatory power retained in wetland bird case study

Species often exhibit regionally specific habitat associations, so habitat association models developed in one region might not be accurate or even appropriate for other regions. Three programs to survey wetland-breeding birds covering (respectively) Great Lakes coastal wetlands, inland Great Lakes wetlands, and the Prairie Pothole Region offer an opportunity to test whether regionally specific mo
Authors
Lisa H. Elliott, Annie M. Bracey, Gerald J. Niemi, Douglas H. Johnson, Thomas M. Gehring, Erin E. Gnass Giese, Giuseppe E. Fiorino, Robert W. Howe, Gregory J. Lawrence, Christopher J. Norment, Douglas C. Tozer, Lawrence Igl

Introduction to the digitization of seismic data: A user’s guide

Modern seismic data are collected, distributed, and analyzed using digital formats, and this has become a standard for the field. Although most modern seismometers still make use of analog electronic circuits, their data are converted from an analog voltage output to time‐tagged counts by way of digitization. Although much of the digitization process is not complicated to conceptualize, there is a
Authors
Adam T. Ringler, Robert E. Anthony, Patrick Bastien, Adam Pascale, Bion J. Merchant

Gene expression and wildlife health: Varied interpretations based on perspective

We evaluated wildlife population health from the perspective of statistical means vs. variances. We outlined the choices necessary to provide the framework for our study. These consisted of spatial and temporal boundaries (e.g., choice of sentinel species, populations, time frame), measurement techniques (molecular to population level), and appropriate statistical analyses. We chose to assess the
Authors
Lizabeth Bowen, Julie L. Yee, James L. Bodkin, Shannon C. Waters, Michael J. Murray, Heather Coletti, Brenda E. Ballachey, Daniel Monson, A. Keith Miles

Recognizing political influences in participatory social-ecological systems modeling

Stakeholder participation in social-ecological systems (SES) modeling is increasingly considered a desirable way to elicit diverse sources of knowledge about SES behavior and to promote inclusive decision-making in SES. Understanding how participatory modeling processes function in the context of long-term adaptive management of SES may allow for better design of participatory processes to achieve
Authors
Theodore C. Lim, Pierre D. Glynn, Gary W. Shenk, Patrick Bitterman, Joseph H. A. Guillaume, John Little, D. G. Webster

Sensitivity of the Penman-Monteith reference evapotranspiration equation to meteorological variables for Puerto Rico

Spatiotemporal variations in reference evapotranspiration (ETo) are sensitive to the meteorological data used in its estimation. The sensitivity of the ASCE standardized ETo equation to meteorological variables from GOES-PRWEB dataset was evaluated for the island of Puerto Rico. Island wide, ETo is most sensitive to daily mean relative humidity (RHmean), followed by solar radiation, daily maximum
Authors
Michelle M. Irizarry-Ortiz, Eric Harmsen