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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 3984

Achieving full connectivity of sites in the multiperiod reserve network design problem

The conservation reserve design problem is a challenge to solve because of the spatial and temporal nature of the problem, uncertainties in the decision process, and the possibility of alternative conservation actions for any given land parcel. Conservation agencies tasked with reserve design may benefit from a dynamic decision system that provides tactical guidance for short-term decision opportu
Authors
Nahid Jafari, Bryan L. Nuse, Clinton T. Moore, Bistra Dilkina, Jeffrey Hepinstall-Cymerman

Disturbance of a rare seabird by ship-based tourism in a marine protected area

Managers of marine protected areas (MPAs) must often seek ways to allow for visitation while minimizing impacts to the resources they are intended to protect. Using shipboard observers, we quantified the “zone of disturbance” for Kittlitz’s and marbled murrelets (Brachyramphus brevirostris and B. marmoratus) exposed to large cruise ships traveling through Glacier Bay National Park, one of the la
Authors
Timothy K. Marcella, Scott M. Gende, Daniel D. Roby, Arthur Allignol

Response of fish population dynamics to mitigation activities in a large regulated river

Extensive water development in large rivers has precipitated many negative ecological effects on native fish populations. Mitigation for such development often focuses on restoring biological integrity through remediation of the physical and chemical properties of regulated rivers. However, evaluating and defining the success of those programs can be difficult. We modeled the influence of mitigati
Authors
Carson J. Watkins, Tyler J. Ross, Michael C. Quist, Ryan S. Hardy

Contributions of wildland fire to terrestrial ecosystem carbon dynamics in North America from 1990 to 2012

Burn area and the frequency of extreme fire events have been increasing during recent decades in North America, and this trend is expected to continue over the 21st century. While many aspects of the North American carbon budget have been intensively studied, the net contribution of fire disturbance to the overall net carbon flux at the continental scale remains uncertain. Based on national scale,
Authors
Guangsheng Chen, Daniel J. Hayes, A. David McGuire

Distribution and abundance of Millicoma Dace in the Coos River Basin, Oregon

The Millicoma Dace Rhinichthys cataractae is a form of Longnose Dace endemic to the Coos River drainage in southwestern Oregon. Sparse species records in the Oregon State University Ichthyology Collection and database and infrequent recent encounters prompted surveys to assess the current status and distribution of the species. In 2014, we surveyed locations that had historically supported Millico
Authors
Paul D. Scheerer, James Peterson, Shaun Clements

A dynamic spatio-temporal model for spatial data

Analyzing spatial data often requires modeling dependencies created by a dynamic spatio-temporal data generating process. In many applications, a generalized linear mixed model (GLMM) is used with a random effect to account for spatial dependence and to provide optimal spatial predictions. Location-specific covariates are often included as fixed effects in a GLMM and may be collinear with the spat
Authors
Trevor J. Hefley, Mevin Hooten, Ephraim M. Hanks, Robin Russell, Daniel P. Walsh

Do we need demographic data to forecast plant population dynamics?

Rapid environmental change has generated growing interest in forecasts of future population trajectories. Traditional population models built with detailed demographic observations from one study site can address the impacts of environmental change at particular locations, but are difficult to scale up to the landscape and regional scales relevant to management decisions. An alternative is to buil
Authors
Andrew T. Tredennick, Mevin Hooten, Peter B. Adler

Matching watershed and otolith chemistry to establish natal origin of an endangered desert lake sucker

Stream habitat restoration and supplemental stocking of hatchery-reared fish have increasingly become key components of recovery plans for imperiled freshwater fish; however, determining when to discontinue stocking efforts, prioritizing restoration areas, and evaluating restoration success present a conservation challenge. In this study, we demonstrate that otolith microchemistry is an effective
Authors
Deanna D. Strohm, Phaedra Budy, Todd A. Crowl

Comparative precision of age estimates from two southern reservoir populations of paddlefish [Polyodon spathula (Walbaum, 1792)]

The aim of the study was to determine whether location and sex affected the age precision estimates between two southern, reservoir populations of paddlefish [Polyodon spathula (Walbaum, 1792)]. From 589 paddlefish collected in Grand Lake and Keystone Lake, Oklahoma in 2011, ages from dentaries were estimated using three independent readers and precision was compared with coefficient of variation
Authors
James M. Long, Ashley Nealis

Using a full annual cycle model to evaluate long-term population viability of the conservation-reliant Kirtland's warbler after successful recovery

Long-term management planning for conservation-reliant migratory songbirds is particularly challenging because habitat quality in different stages and geographic locations of the annual cycle can have direct and carry-over effects that influence the population dynamics. The Neotropical migratory songbird Kirtland's warbler Setophaga kirtlandii (Baird 1852) is listed as endangered under the U.S. En
Authors
Donald J. Brown, Christine Ribic, Deahn M. Donner, Mark D. Nelson, Carol I. Bocetti, Christie M. Deloria-Sheffield

A paired-laser photogrammetric method for in situ length measurement of benthic fishes

Photogrammetry, a technique to obtain measurements from photographs, may be a valid method for measuring lengths of rare, threatened, or endangered species. Photogrammetric methods of measurement are nonintrusive and reduce the possibility of physical damage or physiological stress associated with the capture and handling of individuals. We evaluated precision and accuracy of photogrammetric lengt
Authors
Austin A. Rizzo, Stuart A. Welsh, Patricia A. Thompson

When mechanism matters: Bayesian forecasting using models of ecological diffusion

Ecological diffusion is a theory that can be used to understand and forecast spatio-temporal processes such as dispersal, invasion, and the spread of disease. Hierarchical Bayesian modelling provides a framework to make statistical inference and probabilistic forecasts, using mechanistic ecological models. To illustrate, we show how hierarchical Bayesian models of ecological diffusion can be imple
Authors
Trevor J. Hefley, Mevin Hooten, Robin E. Russell, Daniel P. Walsh, James A. Powell