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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 3984

Latent spatial models and sampling design for landscape genetics

We propose a spatially-explicit approach for modeling genetic variation across space and illustrate how this approach can be used to optimize spatial prediction and sampling design for landscape genetic data. We propose a multinomial data model for categorical microsatellite allele data commonly used in landscape genetic studies, and introduce a latent spatial random effect to allow for spatial co
Authors
Ephraim M. Hanks, Mevin Hooten, Steven T. Knick, Sara J. Oyler-McCance, Jennifer A. Fike, Todd B. Cross, Michael K. Schwartz

Dog days of summer: Influences on decision of wolves to move pups

For animals that forage widely, protecting young from predation can span relatively long time periods due to the inability of young to travel with and be protected by their parents. Moving relatively immobile young to improve access to important resources, limit detection of concentrated scent by predators, and decrease infestations by ectoparasites can be advantageous. Moving young, however, can
Authors
David E. Ausband, Michael S. Mitchell, Sarah B. Bassing, Matthew Nordhagen, Douglas W. Smith, Daniel R. Stahler

Biological invasions, ecological resilience and adaptive governance

In a world of increasing interconnections in global trade as well as rapid change in climate and land cover, the accelerating introduction and spread of invasive species is a critical concern due to associated negative social and ecological impacts, both real and perceived. Much of the societal response to invasive species to date has been associated with negative economic consequences of invasion
Authors
Brian C. Chaffin, Ahjond S. Garmestani, David G. Angeler, Dustin L. Herrmann, Craig A. Stow, Magnus Nystrom, Jan Sendzimir, Matthew E. Hopton, Jurek Kolasa, Craig R. Allen

Adaptive management for soil ecosystem services

Ecosystem services provided by soil include regulation of the atmosphere and climate, primary (including agricultural) production, waste processing, decomposition, nutrient conservation, water purification, erosion control, medical resources, pest control, and disease mitigation. The simultaneous production of these multiple services arises from complex interactions among diverse aboveground and b
Authors
Hannah E. Birge, Rebecca A. Bevans, Craig R. Allen, David G. Angeler, Sara G. Baer, Diana H. Wall

Evolutionary traps as keys to understanding behavioral maladaptation

Evolutionary traps are severe cases of behavioral maladaptation that occur when, due to human activity, the cues animals use to guide their behavior become uncoupled from their fitness consequences. The result is that animals can prefer the most dangerous resources or behaviors, even when better options are available. Traps are increasingly common and represent a significant wildlife conservation
Authors
Bruce A. Robertson, Anna Chalfoun

Management implications of brood division in Golden-winged Warblers

Brood division in the postfledging period is a common avian behavior that is not well understood. Brood division has been reported in Golden-winged Warblers (Vermivora chrysoptera), but it is not known how common this behavior is, whether males and females exhibit different strategies related to parental care and habitat use, or how brood division might influence management strategies. We radiomar
Authors
Sean M. Peterson, Henry M. Streby, David E. Andersen

Projected gains and losses of wildlife habitat from bioenergy-induced landscape change

Domestic and foreign renewable energy targets and financial incentives have increased demand for woody biomass and bioenergy in the southeastern United States. This demand is expected to be met through purpose-grown agricultural bioenergy crops, short-rotation tree plantations, thinning and harvest of planted and natural forests, and forest harvest residues. With results from a forest economics mo
Authors
Nathan M. Tarr, Matthew J. Rubino, Jennifer K. Costanza, Alexa McKerrow, Jaime A. Collazo, Robert C. Abt

Comparing life history characteristics of Lake Michigan’s naturalized and stocked Chinook Salmon

Lake Michigan supports popular fisheries for Chinook Salmon Oncorhynchus tshawytscha that have been sustained by stocking since the late 1960s. Natural recruitment of Chinook Salmon in Lake Michigan has increased in the past few decades and currently contributes more than 50% of Chinook Salmon recruits. We hypothesized that selective forces differ for naturalized populations born in the wild and h
Authors
Janice A Kerns, Mark W. Rogers, David B. Bunnell, Randall M. Claramunt, Paris D. Collingsworth

Landscape and flow metrics affecting the distribution of a federally-threatened fish: Improving management, model fit, and model transferability

Truncated distributions of pelagophilic fishes have been observed across the Great Plains of North America, with water use and landscape fragmentation implicated as contributing factors. Developing conservation strategies for these species is hindered by the existence of multiple competing flow regime hypotheses related to species persistence. Our primary study objective was to compare the predict
Authors
Thomas A. Worthington, T. Zhang, Daniel R. Logue, Aaron R. Mittelstet, Shannon K. Brewer

Bioenergy production and forest landscape change in the southeastern United States

Production of woody biomass for bioenergy, whether wood pellets or liquid biofuels, has the potential to cause substantial landscape change and concomitant effects on forest ecosystems, but the landscape effects of alternative production scenarios have not been fully assessed. We simulated landscape change from 2010 to 2050 under five scenarios of woody biomass production for wood pellets and liqu
Authors
Jennifer K. Costanza, Robert C. Abt, Alexa McKerrow, Jaime A. Collazo

Tradeoffs between physical captures and PIT tag antenna array detections: A case study for the Lower Colorado River Basin population of humpback chub (Gila cypha)

A key component of many monitoring programs for special status species involves capture and handling of individuals as part of capture-recapture efforts for tracking population health and demography. Minimizing negative impacts from sampling, such as through reduced handling, aids prevention of negative impacts on species from monitoring efforts. Using simulation analyses, we found that long-term
Authors
Kristen Nicole Pearson, William L. Kendall, Dana L. Winkelman, William R. Persons

AnimalFinder: A semi-automated system for animal detection in time-lapse camera trap images

Although the use of camera traps in wildlife management is well established, technologies to automate image processing have been much slower in development, despite their potential to drastically reduce personnel time and cost required to review photos. We developed AnimalFinder in MATLAB® to identify animal presence in time-lapse camera trap images by comparing individual photos to all images con
Authors
Jennifer L. Price Tack, Brian S. West, Conor P. McGowan, Stephen S. Ditchkoff, Stanley J. Reeves, Allison Keever, J. Barry Grand