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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 3984

Physical and chemical constraints limit the habitat window for an endangered mussel

Development of effective conservation and restoration strategies for freshwater pearly mussels requires identification of environmental constraints on the distributions of individual mussel species. We examined whether the spatial distribution of the endangered Alasmidonta heterodon in Flat Brook, a tributary of the upper Delaware River, was constrained by water chemistry (i.e., calcium availabili
Authors
Cara Campbell, Karen L. Prestegaard

A decision support tool for adaptive management of native prairie ecosystems

The Native Prairie Adaptive Management initiative is a decision support framework that provides cooperators with management-action recommendations to help them conserve native species and suppress invasive species on prairie lands. We developed a Web-based decision support tool (DST) for the U.S. Fish and Wildlife Service and the U.S. Geological Survey initiative. The DST facilitates cross-organiz
Authors
Victoria M. Hunt, Sarah Jacobi, Jill J. Gannon, Jennifer E. Zorn, Clinton T. Moore, Eric V. Lonsdorf

Salinity effects on plasma ion levels, cortisol, and osmolality in Chinook salmon following lethal sampling

Studies on hydromineral balance in fishes frequently employ measurements of electrolytes following euthanasia. We tested the effects of fresh- or salt-water euthanasia baths of tricaine mesylate (MS-222) on plasma magnesium (Mg2+) and sodium (Na+) ions, cortisoland osmolality in fish exposed to saltwater challenges, and the ion and steroid hormone fluctuations over time following euthanasia in juv
Authors
Heather Stewart, David L. G. Noakes, Karen M. Cogliati, James Peterson, Martin H. Iversen, Carl B. Schreck

Ungulate reproductive parameters track satellite observations of plant phenology across latitude and climatological regimes

The effect of climatically-driven plant phenology on mammalian reproduction is one key to predicting species-specific demographic responses to climate change. Large ungulates face their greatest energetic demands from the later stages of pregnancy through weaning, and so in seasonal environments parturition dates should match periods of high primary productivity. Interannual variation in weather i
Authors
David Stoner, Joseph O. Sexton, Jyoteshwar Nagol, Heather H. Bernales, Thomas C. Edwards

Avian response to fire in pine–oak forests of Great Smoky Mountains National Park following decades of fire suppression

Fire suppression in southern Appalachian pine–oak forests during the past century dramatically altered the bird community. Fire return intervals decreased, resulting in local extirpation or population declines of many bird species adapted to post-fire plant communities. Within Great Smoky Mountains National Park, declines have been strongest for birds inhabiting xeric pine–oak forests that depend
Authors
Eli T. Rose, Theodore R. Simons

Dynamic occupancy models for explicit colonization processes

The dynamic, multi-season occupancy model framework has become a popular tool for modeling open populations with occupancies that change over time through local colonizations and extinctions. However, few versions of the model relate these probabilities to the occupancies of neighboring sites or patches. We present a modeling framework that incorporates this information and is capable of describin
Authors
Kristin M. Broms, Mevin Hooten, Devin S. Johnson, Res Altwegg, Loveday Conquest

Who Knew? Inconnu

In 1999, I moved to Alaska to serve as unit leader of the U.S. Geological Survey Alaska Cooperative Fish and Wildlife Research Unit and professor of fisheries in the School of Fisheries and Ocean Sciences at the University of Alaska Fairbanks. What was unusual about this move was that before this I was an easterner and southerner, having done my graduate work in fisheries at Texas A&M University a
Authors
F. Joseph Margraf

Predicting thermally stressful events in rivers with a strategy to evaluate management alternatives

Water temperature is an important factor in river ecology. Numerous models have been developed to predict river temperature. However, many were not designed to predict thermally stressful periods. Because such events are rare, traditionally applied analyses are inappropriate. Here, we developed two logistic regression models to predict thermally stressful events in the Delaware River at the US Geo
Authors
K.O. Maloney, J. C. Cole, M. Schmid

Population dynamics and evaluation of alternative management strategies for nonnative Lake Trout in Priest Lake, Idaho

Lake Trout Salvelinus namaycush have been introduced widely throughout the western USA to enhance recreational fisheries, but high predatory demand can create challenges for management of yield and trophy fisheries alike. Lake Trout were introduced to Priest Lake, Idaho, during the 1920s, but few fishery-independent data are available to guide current or future management actions. We collected fis
Authors
Elizabeth L. Ng, Jim P. Fredericks, Michael C. Quist

Global perspectives on the urban stream syndrome

Urban streams commonly express degraded physical, chemical, and biological conditions that have been collectively termed the “urban stream syndrome”. The description of the syndrome highlights the broad similarities among these streams relative to their less-impaired counterparts. Awareness of these commonalities has fostered rapid improvements in the management of urban stormwater for the protect
Authors
Allison H. Roy, Derek B. Booth, Krista A. Capps, Benjamin Smith

Using standardized fishery data to inform rehabilitation efforts

Lakes and reservoirs progress through an aging process often accelerated by human activities, resulting in degradation or loss of ecosystem services. Resource managers thus attempt to slow or reverse the negative effects of aging using a myriad of rehabilitation strategies. Sustained monitoring programs to assess the efficacy of rehabilitation strategies are often limited; however, long-term stand
Authors
Jonathan J. Spurgeon, Nathaniel T. Stewart, Mark A. Pegg, Kevin L. Pope, Mark T. Porath

Assessing models of speciation under different biogeographic scenarios; An empirical study using multi-locus and RNA-seq analyses

Evolutionary biology often seeks to decipher the drivers of speciation, and much debate persists over the relative importance of isolation and gene flow in the formation of new species. Genetic studies of closely related species can assess if gene flow was present during speciation, because signatures of past introgression often persist in the genome. We test hypotheses on which mechanisms of spec
Authors
Taylor Edwards, Marc Tollis, PingHsun Hsieh, Ryan N. Gutenkunst, Zhen Liu, Kenro Kusumi, Melanie Culver, Robert W. Murphy