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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 3984

Restricted spatial regression in practice: Geostatistical models, confounding, and robustness under model misspecification

In spatial generalized linear mixed models (SGLMMs), covariates that are spatially smooth are often collinear with spatially smooth random effects. This phenomenon is known as spatial confounding and has been studied primarily in the case where the spatial support of the process being studied is discrete (e.g., areal spatial data). In this case, the most common approach suggested is restricted spa
Authors
Ephraim M. Hanks, Erin M. Schliep, Mevin Hooten, Jennifer A. Hoeting

Fatty-acid profiles of white muscle and liver in stream-maturing steelhead trout Oncorhynchus mykiss from early migration to kelt emigration

The profiles of specific fatty acids (FA) in white muscle and liver of fasting steelhead troutOncorhynchus mykiss were evaluated at three periods during their prespawning migration and at kelt emigration in the Snake–Columbia River of Washington, Oregon and Idaho, to improve the understanding of energy change. Twenty-seven FAs were identified; depletion of 10 of these was positively correlated in
Authors
Zachary L. Penney, Christine M. Moffitt

Monitoring Eastern Spadefoot (Scaphiopus holbrookii) response to weather with the use of a passive integrated transponder (PIT) system

Eastern Spadefoots (Scaphiopus holbrookii) are probably one of the least-understood amphibian species in the United States. In New England, populations are localized and it is likely that some populations go undocumented because of the species' cryptic habits. We used passive integrated transponders (PIT tags) to monitor burrow emergence with the aid of continuously running, stationary (but portab
Authors
Kevin J. Ryan, Aram J.K. Calhoun, Brad C. Timm, Joseph D. Zydlewski

Land use structures fish assemblages in reservoirs of the Tennessee River

Inputs of nutrients, sediments and detritus from catchments can promote selected components of reservoir fish assemblages, while hindering others. However, investigations linking these catchment subsidies to fish assemblages have generally focussed on one or a handful of species. Considering this paucity of community-level awareness, we sought to explore the association between land use and fish a
Authors
Leandro E. Miranda, J. M. Bies, D. A. Hann

Evaluating the use of side-scan sonar for detecting freshwater mussel beds in turbid river environments

Side-scan sonar is a valuable tool for mapping habitat features in many aquatic systems suggesting it may also be useful for locating sedentary biota. The objective of this study was to determine if side-scan sonar could be used to identify freshwater mussel (unionid) beds and the required environmental conditions. We used side-scan sonar to develop a series of mussel-bed reference images by placi
Authors
Jarrod Powers, Shannon K. Brewer, James M. Long, Thomas Campbell

Survey of intersex largemouth bass from impoundments in Georgia USA

Intersex fish are increasingly being reported worldwide, primarily in rivers that receive treated wastewater, but few studies have investigated intersex in waters that do not receive wastewater. In a recent reconnaissance survey of intersex fish in North America, a high rate of intersex was reported for Largemouth Bass Micropterus salmoides in some southeastern U.S. rivers; however, the occurrence
Authors
Kristen A. Kellock, Brittany E. Trushel, Patrick C. Ely, Cecil A. Jennings, Robert B. Bringolf

Pathologic and physiologic effects associated with long-term intracoelomic transmitters in captive Siberian sturgeon

Intracoelomic transmitters are commonly used to evaluate migratory patterns, distribution, and habitat use of many species of fish. Currently, transmitter implantation relies mostly on the assumption that transmitters do not cause any adverse physiological or pathological effects on the animal. To investigate these effects, we surgically implanted 60 Siberian Sturgeon Acipenser baeri with transmit
Authors
S. Shaun Boone, Stephen J. Divers, Alvin C. Camus, Douglas C. Peterson, Cecil A. Jennings, James L. Shelton, Sonia M. Hernandez

Evaluation of four suture materials for surgical incision closure in Siberian sturgeon

The visual and microscopic tissue reactions to the absorbable monofilament Monocryl, absorbable monofilament triclosan-coated Monocryl-Plus, absorbable multifilament Vicryl, and nonabsorbable monofilament Prolene were evaluated for their use of surgical closure in Siberian Sturgeon Acipenser baerii. Postoperative assessments were conducted at 1, 2, 8, 12, and 26 and 55 weeks to visually evaluate t
Authors
S. Shaun Boone, Sonia M. Hernandez, Alvin C. Camus, Douglas C. Peterson, Cecil A. Jennings, James L. Shelton, Stephen J. Divers

East versus West: organic contaminant differences in brown pelican (Pelecanus occidentalis) eggs from South Carolina, USA and the Gulf of California, Mexico

Brown pelicans (Pelecanus occidentalis) were listed as endangered in the United States in 1970, largely due to reproductive failure and mortality caused by organochlorine contaminants, such as DDT. The southeast population, P.o. carolinensis, was delisted in 1985, while the west coast population, P.o. californicus, was not delisted until 2009. As fish-eating coastal seabirds, brown pelicans may se
Authors
Stacy S. Vander Pol, Daniel W. Anderson, Patrick G.R. Jodice, Joyce E. Stuckey

Family Bovidae (Hollow-horned Ruminants)

Probably the single most eye-catching aspect of the current volume is the explosion of species recognized in the family Bovidae (Hollow-horned Ruminants). In 2005, the third edition of Mammal Species of the World listed 143 species in 50 genera of Bovidae. That list, prepared by the late Peter Grubb, was somewhat traditional and provisional, as he was engaged with his long-time colleague, Colin Gr
Authors
Colin P. Groves, David M. Leslie, Brent A. Huffman, Raul Valdez, Khushal Habibi, Paul Weinberg, James Burton, Peter Jarman, William Robichaud

An interpolation method for stream habitat assessments

Interpolation of stream habitat can be very useful for habitat assessment. Using a small number of habitat samples to predict the habitat of larger areas can reduce time and labor costs as long as it provides accurate estimates of habitat. The spatial correlation of stream habitat variables such as substrate and depth improves the accuracy of interpolated data. Several geographical information sys
Authors
Kenneth R. Sheehan, Stuart A. Welsh

The transboundary nature of seabird ecology

The term ‘seabird’ is generally applied to avian species that forage in the marine environment over open water. Seabirds typically nest in colonies and are long-lived species with low annual reproductive rates. Seabird breeding sites typically occur on islands or along coasts and as such are often at the boundaries of ecological or political zones. During the breeding season, seabirds cross a very
Authors
Patrick G.R. Jodice, Robert M. Suryan