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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 3984

Understanding fish assemblage structure in lentic ecosystems: Relative effects of abiotic factors and management legacies

We investigated associations of fish assemblages and habitat characteristics (e.g., morphology and water chemistry) from 45 natural lakes and reservoirs in Iowa to determine whether species or trophic guild composition and environmental correlations were concordant between waterbodies of different origins. Overall, fish assemblage composition between natural lakes and reservoirs was consistently d
Authors
Jesse Robert Fischer, Michael C. Quist

Occurrence, Abundance, and Associations of Topeka Shiners (Notropis topeka) in Restored and Unrestored Oxbows in Iowa and Minnesota, USA

In the USA, the Topeka shiner (Notropis topeka) is a federally listed endangered species that has been in decline for decades. A key reason for the decline is the alteration of naturally flowing streams and associated oxbow habitats resulting from land-use changes. The focus of recent conservation efforts for Topeka shiners has been the restoration of oxbow habitats by removing sediment from natur
Authors
Nicholas T. Simpson, Alexander P. Bybel, Michael J. Weber, Clay Pierce, Kevin J. Roe

Harvest–release decisions in recreational fisheries

Most fishery regulations aim to control angler harvest. Yet, we lack a basic understanding of what actually determines the angler’s decision to harvest or release fish caught. We used XGBoost, a machine learning algorithm, to develop a predictive angler harvest–release model by taking advantage of an extensive recreational fishery data set (24 water bodies, 9 years, and 193 523 fish). We were able
Authors
Mark A Kaemingk, Keith L. Hurley, Christopher J. Chizinski, Kevin L. Pope

Population estimates of Antillean manatees in Puerto Rico: An analytical framework for aerial surveys using multi-pass removal sampling

Effective management of the threatened Antillean manatee (Trichechus manatus manatus) in Puerto Rico requires reliable estimates of population size. Estimates are needed to assess population responses to management actions, and whether recovery objectives have been met. Aerial surveys have been conducted since 1976, but none adjusted for imperfect detection. We summarize surveys since 1976, report
Authors
Jaime A. Collazo, M.J. Krachey, K.H. Pollock, F.J. Pérez-Aguilo, J.P. Zegarra, A.A. Mignucci-Giannoni

Demographic factors affecting population growth in giant gartersnakes

Demographic models provide insight into which vital rates and life stages contribute most to population growth. Integral projection models (IPMs) offer flexibility in matching model structure to a species’ demography. For many rare species, data are lacking for key vital rates, and uncertainty might dissuade researchers from attempting to build a demographic model. We present work that highlights
Authors
Jonathan P. Rose, Julia Ersan, Glenn D. Wylie, Michael L. Casazza, Brian J. Halstead

Ecological health indicators

Contemporary policymakers rarely stress ecological knowledge, and yet this knowledge remains crucial—just as it was in prehistory—to protecting overall human well-being. Measuring carefully selected ecological health indicators—that is, signs or symptoms, especially those focused on biotic assemblages—can provide insights into the ecological condition of a place and the variety of ecological conse
Authors
Paul L. Angermeier

Trade-offs relating to grassland and forest mine reclamation approaches in the central Appalachian region and its implications for the songbird community

Surface mining in the Appalachian region, USA, converts large areas of mature forest to early-successional habitat. This shift in landscape structure has the potential to reduce habitat availability and suitability for forest-dwelling songbirds by reducing and fragmenting mature forest, but also to increase habitat availability for grassland and shrubland-associated songbirds. We examined the infl
Authors
Petra B. Wood, Eric L. Margenau, Cathy A. Weakland, Donald J. Brown

Population dynamics and evaluation of management scenarios for white sturgeon in the Sacramento-San Joaquin River basin

Recent surveys suggest a declining population of White Sturgeon Acipenser transmontanus in the Sacramento–San Joaquin River basin (SSJ), California. Probable reasons for the decline include overharvest and habitat degradation compounded by poor recruitment during recent droughts. Despite the importance and status of White Sturgeon, knowledge of their population dynamics in the SSJ remains incomple
Authors
Shannon E. Blackburn, Marty L. Gingras, Jason DuBois, Zachary J. Jackson, Michael C. Quist

Spatial and temporal variation of ecosystem properties at macroscales

Although spatial and temporal variation in ecological properties has been well-studied, crucial knowledge gaps remain for studies conducted at macroscales and for ecosystem properties related to material and energy. We test four propositions of spatial and temporal variation in ecosystem properties within a macroscale (1000 km's) extent. We fit Bayesian hierarchical models to thousands of observat
Authors
Patricia A. Soranno, Tyler Wagner, Sarah M. Collins, Jean-Francois Lapierre, Samantha K. Oliver

Bayesian statistics for beginners: A step-by-step approach

Bayesian statistics is currently undergoing something of a renaissance. At its heart is a method of statistical inference in which Bayes' theorem is used to update the probability for a hypothesis as more evidence or information becomes available. It is an approach that is ideally suited to making initial assessments based on incomplete or imperfect information; as that information is gathered and
Authors
Therese M. Donovan, Ruth M. Mickey

Movement and mortality of Atlantic salmonkelts (Salmo salar) released into thePenobscot River, Maine

The Penobscot River is home to the last major run of Atlantic salmon (Salmo salar) in the United States. For over one century, the river has been stocked intensively. Since the late 1970s, most kelts are released to the Penobscot River estuary following spawning in a hatchery. Over that time, the proportion of the run made up of iteroparous individuals has declined to < 1%. These fish may make a d
Authors
George A. Maynard, Lisa K. Izzo, Joseph D. Zydlewski

Distribution of contaminants in the environment and wildlife habitat use: A case study with lead and waterfowl on the Upper Texas Coast

The magnitude and distribution of lead contamination remain unknown in wetland systems. Anthropogenic deposition of lead may be contributing to negative population-level effects in waterfowl and other organisms that depend on dynamic wetland habitats, particularly if they are unable to detect and differentiate levels of environmental contamination by lead. Detection of lead and behavioral response
Authors
Brian Kearns, Stephen K. McDowell, Jena A. Moon, Elizabeth A. Rigby, Warren C. Conway, David A. Haukos