Adam Sepulveda, research zoologist at the USGS Northern Rocky Mountain Science Center, explains a scientists at NOROCK are using environmental DNA — the identification of species through biological information they leave behind in their habitat — to detect invasive species and how this method could change the way scientists find evidence of biodiversity in
Environmental DNA (eDNA)
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Environmental DNA (eDNA) is organismal DNA that can be found in the environment. Environmental DNA originates from cellular material shed by organisms (via skin, excrement, etc.) into aquatic or terrestrial environments that can be sampled and monitored using new molecular methods. Such methodology is important for the early detection of invasive species as well as the detection of rare and cryptic species.
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What is Environmental DNA?
Sources/Usage: Some content may have restrictions. View Media Details
Credit: FISHBIO
DNA, short for deoxyribonucleic acid, is the hereditary material in organisms that contains the biological instructions for building and maintaining them. The chemical structure of DNA is the same for all organisms, but differences exist in the order of the DNA building blocks, known as base pairs. Unique sequences of base pairs, particularly repeating patterns, provide a means to identify species, populations, and even individuals.
Environmental DNA (eDNA) is nuclear or mitochondrial DNA that is released from an organism into the environment. Sources of eDNA include secreted feces, mucous, and gametes; shed skin and hair; and carcasses. eDNA can be detected in cellular or extracellular (dissolved DNA) form.
In aquatic environments, eDNA is diluted and distributed by currents and other hydrological processes (fig. 1), but it only lasts about 7–21 days, depending on environmental conditions (Dejean and others, 2011). Exposure to UVB radiation, acidity, heat, and endo- and exonucleases can degrade eDNA.
Use of eDNA for Inventory and Monitoring
Improved Detection of Native Species
Protocols using eDNA may allow for rapid, cost-effective, and standardized collection of data about species distribution and relative abundance. For small, rare, secretive, and other species that are difficult to detect, eDNA provides an attractive alternative for aquatic inventory and monitoring programs. Increasing evidence demonstrates improved species detection and catch-per-unit effort compared with electrofishing, snorkeling, and other current field methods. Thus, detection of species using eDNA may improve biodiversity assessments and provide information about status, distribution, and habitat requirements for lesser-known species.
Early Detection of Invasive Species
eDNA may also be an effective tool for early detection of aquatic invasive species. Application of eDNA methods for invasive species monitoring may include periodically collecting water samples and screening them for several invasive species at once. Boat-ballast water, a source of introduction for many invasive species including mollusks, also could be sampled. Some intensive eradication programs for invasive species fail when a few surviving individuals recolonize the ecosystem. eDNA methods may provide a means of confirming eradication of all invaders.
Source: Application of Environmental DNA for Inventory and Monitoring of Aquatic Species
Below are related topics about eDNA and water quality.
Water Quality Information by Topic
What is in that water that you just drank? Is it just hydrogen and oxygen atoms? Is it safe for drinking? All water is of a certain "quality" (and you can't tell by just looking), but what does "water quality" really mean? Water full of dirt and grime might work fine for a tomato plant but would you want to drink it? Water quality can be thought of as a measure of the suitability of water for a...
Environmental DNA (eDNA): a New Tool for Monitoring Status and Trends of Ecosystems and Taxa in Hawaii and Pacific Islands
Remote locations, rugged topography, extreme weather conditions, high numbers of threatened and endangered taxa, and widespread degradation of native ecosystems by invasive species makes routine monitoring to determine status and trends of ecosystems and native and invasive taxa difficult and expensive in the Hawaiian Islands. There is a need to supplement existing monitoring protocols with more...
Environmental DNA (eDNA) Sampling Improves Occurrence and Detection Estimates of Invasive Burmese Pythons and Other Constrictor Snakes in Florida
Environmental DNA (eDNA) is organismal DNA that can be found in the environment. Environmental DNA originates from cellular material shed by organisms (via skin, excrement, etc.) into aquatic or terrestrial environments that can be sampled and monitored using new molecular methods. Such methodology is important for the early detection of invasive species as well as the detection of rare and...
Below are multimedia items associated with eDNA and water quality.
What's the Big Idea?— Turning to eDNA to Detect Invasive Species
Adam Sepulveda, research zoologist at the USGS Northern Rocky Mountain Science Center, explains a scientists at NOROCK are using environmental DNA — the identification of species through biological information they leave behind in their habitat — to detect invasive species and how this method could change the way scientists find evidence of biodiversity in
Environmental DNA (eDNA) is organismal DNA that can be found in the environment. Environmental DNA originates from cellular material shed by organisms (via skin, excrement, etc.) into aquatic or terrestrial environments that can be sampled and monitored using new molecular methods. Such methodology is important for the early detection of invasive species as well as the detection of rare and cryptic species.
• Water Science School HOME • Water Quality topics •
What is Environmental DNA?
Sources/Usage: Some content may have restrictions. View Media Details
Credit: FISHBIO
DNA, short for deoxyribonucleic acid, is the hereditary material in organisms that contains the biological instructions for building and maintaining them. The chemical structure of DNA is the same for all organisms, but differences exist in the order of the DNA building blocks, known as base pairs. Unique sequences of base pairs, particularly repeating patterns, provide a means to identify species, populations, and even individuals.
Environmental DNA (eDNA) is nuclear or mitochondrial DNA that is released from an organism into the environment. Sources of eDNA include secreted feces, mucous, and gametes; shed skin and hair; and carcasses. eDNA can be detected in cellular or extracellular (dissolved DNA) form.
In aquatic environments, eDNA is diluted and distributed by currents and other hydrological processes (fig. 1), but it only lasts about 7–21 days, depending on environmental conditions (Dejean and others, 2011). Exposure to UVB radiation, acidity, heat, and endo- and exonucleases can degrade eDNA.
Use of eDNA for Inventory and Monitoring
Improved Detection of Native Species
Protocols using eDNA may allow for rapid, cost-effective, and standardized collection of data about species distribution and relative abundance. For small, rare, secretive, and other species that are difficult to detect, eDNA provides an attractive alternative for aquatic inventory and monitoring programs. Increasing evidence demonstrates improved species detection and catch-per-unit effort compared with electrofishing, snorkeling, and other current field methods. Thus, detection of species using eDNA may improve biodiversity assessments and provide information about status, distribution, and habitat requirements for lesser-known species.
Early Detection of Invasive Species
eDNA may also be an effective tool for early detection of aquatic invasive species. Application of eDNA methods for invasive species monitoring may include periodically collecting water samples and screening them for several invasive species at once. Boat-ballast water, a source of introduction for many invasive species including mollusks, also could be sampled. Some intensive eradication programs for invasive species fail when a few surviving individuals recolonize the ecosystem. eDNA methods may provide a means of confirming eradication of all invaders.
Source: Application of Environmental DNA for Inventory and Monitoring of Aquatic Species
Below are related topics about eDNA and water quality.
Water Quality Information by Topic
What is in that water that you just drank? Is it just hydrogen and oxygen atoms? Is it safe for drinking? All water is of a certain "quality" (and you can't tell by just looking), but what does "water quality" really mean? Water full of dirt and grime might work fine for a tomato plant but would you want to drink it? Water quality can be thought of as a measure of the suitability of water for a...
Environmental DNA (eDNA): a New Tool for Monitoring Status and Trends of Ecosystems and Taxa in Hawaii and Pacific Islands
Remote locations, rugged topography, extreme weather conditions, high numbers of threatened and endangered taxa, and widespread degradation of native ecosystems by invasive species makes routine monitoring to determine status and trends of ecosystems and native and invasive taxa difficult and expensive in the Hawaiian Islands. There is a need to supplement existing monitoring protocols with more...
Environmental DNA (eDNA) Sampling Improves Occurrence and Detection Estimates of Invasive Burmese Pythons and Other Constrictor Snakes in Florida
Environmental DNA (eDNA) is organismal DNA that can be found in the environment. Environmental DNA originates from cellular material shed by organisms (via skin, excrement, etc.) into aquatic or terrestrial environments that can be sampled and monitored using new molecular methods. Such methodology is important for the early detection of invasive species as well as the detection of rare and...
Below are multimedia items associated with eDNA and water quality.
What's the Big Idea?— Turning to eDNA to Detect Invasive Species
Adam Sepulveda, research zoologist at the USGS Northern Rocky Mountain Science Center, explains a scientists at NOROCK are using environmental DNA — the identification of species through biological information they leave behind in their habitat — to detect invasive species and how this method could change the way scientists find evidence of biodiversity in
Adam Sepulveda, research zoologist at the USGS Northern Rocky Mountain Science Center, explains a scientists at NOROCK are using environmental DNA — the identification of species through biological information they leave behind in their habitat — to detect invasive species and how this method could change the way scientists find evidence of biodiversity in