Publications

Ecological observations sustained over decades often reveal abrupt changes in biological communities that signal altered ecosystem states. We report a large shift in the biological communities of San Francisco Bay, first detected as increasing phytoplankton biomass and occurrences of new seasonal blooms that began in 1999. This phytoplankton increase is paradoxical because it occurred in an era of

Although the pelagic fish community of the upper San Francisco Estuary historically has shown substantial variability, a recent collapse has captured the attention of resource managers, scientists, legislators, and the general public. The ecological and management consequences of the decline are most serious for delta smelt (Hypomesus transpacificus), a threatened species whose narrow range overla

No abstract available.

No abstract available.

We use selected monitoring data to illustrate how localized water diversions from seasonal barriers, gate operations, and export pumps alter water quality across the Sacramento-San Joaquin Delta (California). Dynamics of water-quality variability are complex because the Delta is a mixing zone of water from the Sacramento and San Joaquin Rivers, agricultural return water, and the San Francisco Estu

Climate over the watershed of the San Francisco Bay Delta estuary system varies on a wide range of space and time scales, and affects downstream estuarine ecosystems. The historical climate has included mild to severe droughts and torrential rains accompanied by flooding, providing important lessons for present-day resource managers. Paleoclimate records spanning the last 10,000 years, synthesized

Analysis of a series of historical bathymetric surveys has revealed large changes in morphology and sedimentation from 1856 to 1983 in San Pablo Bay, California. In 1856, the morphology of the bay was complex, with a broad main channel, a major side channel connecting to the Petaluma River, and an ebb-tidal delta crossing shallow parts of the bay. In 1983, its morphology was simpler because all ch

The import of resources (food, nutrients) sustains biological production and food webs in resource-limited habitats. Resource export from donor habitats subsidizes production in recipient habitats, but the ecosystem-scale consequences of resource translocation are generally unknown. Here, I use a nutrient-phytoplankton-zooplankton model to show how dispersive connectivity between a shallow autotro

Sea level elevations from near the mouth of San Francisco Bay are used to describe the low-frequency variability of forcing of the coastal ocean on the Bay at a variety of temporal scales. About 90% of subtidal fluctuations in sea level in San Francisco Bay are driven by the sea level variations in the coastal ocean that propagate into the Bay at the estuary mouth. We use the 100-year sea level re

Widespread sediment toxicity has been documented throughout the San Francisco Estuary since the mid-1980s. Studies conducted in the early 1990s as part of the Bay Protection and Toxic Cleanup Program (BPTCP), and more recently as part of the Regional Monitoring Program (RMP) have continued to find sediment toxicity in the Estuary. Results of these studies have shown a number of sediment toxic hots

The U.S. Geological Survey, in cooperation with the California Coastal Conservancy and the National Oceanic and Atmospheric Administration, mapped the floor of south San Francisco Bay and adjoining land using single-beam sonar and airborne lidar (light detection and ranging). To learn more, visit http://pubs.usgs.gov/sim/2007/2987/.   View eastward. Elevations in mapped area color coded: purple (a

This report documents the development and application of a box model to simulate water level, salinity, and temperature of the Alviso Salt Pond Complex in South San Francisco Bay. These ponds were purchased for restoration in 2003 and currently are managed by the U.S. Fish and Wildlife Service to maintain existing wildlife habitat and prevent a build up of salt during the development of a long-ter