Jared J. Homola, PhD (Former Employee)
Science and Products
Optimization of wetland environmental DNA metabarcoding protocols for Great Lakes region herpetofauna
Many species of reptiles and amphibians (herpetofauna) rely on wetlands that are being degraded and lost at a high rate. Characterization of herpetofauna diversity in different wetland types may help guide conservation strategies. However, traditional survey methods often involve sampling within small temporal windows, and the gear deployed may be taxonomically biased, thus, they may...
Authors
Olivia M. Ruppert, Jared Joseph Homola, Jeannette Kanefsky, Alyssa Swinehart, Kim T. Scribner, John A. Robinson
Genomic data characterize reproductive ecology patterns in Michigan invasive Red Swamp Crayfish (Procambarus clarkii)
The establishment and spread of invasive species are directly related to intersexual interactions as dispersal and reproductive success are related to distribution, effective population size, and population growth. Accordingly, populations established by r-selected species are particularly difficult to suppress or eradicate. One such species, the red swamp crayfish (Procambarus clarkii)...
Authors
Nicole E. Adams, Jared Joseph Homola, Nicholas Sard, Lucas R. Nathan, Brian M. Roth, John A. Robinson, Kim T. Scribner
Demographic patterns of walleye (Sander vitreus) reproductive success in a Wisconsin population
Harvest in walleye Sander vitreus fisheries is size-selective and could influence phenotypic traits of spawners; however, contributions of individual spawners to recruitment are unknown. We used parentage analyses using single nucleotide polymorphisms to test whether parental traits were related to the probability of offspring survival in Escanaba Lake, Wisconsin. From 2017 to 2020, 1339...
Authors
Robert W. Davis, Levi M. Simmons, Stephanie L. Shaw, Greg. G Sass, Nicholas Sard, Daniel A. Isermann, Wesley Larson, Jared Joseph Homola
An amplicon genotyping panel suitable for species identification and population genetics in sauger (Sander canadensis) and walleye (Sander vitreus)
Sauger (Sander canadensis) and walleye (Sander vitreus) are closely related North American fish species that are often managed by fishery agencies throughout their ranges. However, genotyping resources for sauger are presently limited to a small set of microsatellite loci. We evaluated whether primers in an existing walleye genotyping-in-thousands panel could amplify single nucleotide...
Authors
Jared Joseph Homola, Wesley Larson, Paul Albosta
High-density genomic data reveal fine-scale population structure and pronounced islands of adaptive divergence in lake whitefish (Coregonus clupeaformis) from Lake Michigan
Understanding patterns of genetic structure and adaptive variation in natural populations is crucial for informing conservation and management. Past genetic research using 11 microsatellite loci identified six genetic stocks of lake whitefish (Coregonus clupeaformis) within Lake Michigan, USA. However, ambiguity in genetic stock assignments suggested those neutral microsatellite markers...
Authors
Yue Shi, Jared Joseph Homola, Peter T. Euclide, Daniel A. Isermann, David C. Caroffino, Megan V. McPhee
Resist-accept-direct (RAD) considerations for climate change adaptation in fisheries: The Wisconsin experience
Decision-makers in inland fisheries management must balance ecologically and socially palatable objectives for ecosystem services within financial or physical constraints. Climate change has transformed the potential range of ecosystem services available. The Resist-Accept-Direct (RAD) framework offers a foundation for responding to climate-induced ecosystem modification; however...
Authors
Zachary S. Feiner, Aaron D. Shultz, Greg. G Sass, Ashley Trudeau, Matthew G. Mitro, Colin J. Dassow, Alexander W. Latzka, Daniel A. Isermann, Bryan M. Maitland, Jared Joseph Homola, Holly Susan Embke, Michael Preul
Coalescent methods reconstruct contributions of natural colonization and stocking to origins of Michigan inland Cisco (Coregonus artedi)
Fish population structure in previously glaciated regions is often influenced by natural colonization processes and human-mediated dispersal, including fish stocking. Endemic populations are of conservation interest because they may contain rare and unique genetic variation. While coregonines are native to certain Michigan inland lakes, some were stocked with fish from Great Lakes...
Authors
Jared Joseph Homola, John A. Robinson, Jeannette Kanefsky, Wendylee Stott, Gary Whelan, Kim T. Scribner
RAPTURE (RAD capture) panel facilitates analyses characterizing sea lamprey reproductive ecology and movement dynamics
Genomic tools are lacking for invasive and native populations of sea lamprey (Petromyzon marinus). Our objective was to discover single nucleotide polymorphism (SNP) loci to conduct pedigree analyses to quantify reproductive contributions of adult sea lampreys and dispersion of sibling larval sea lampreys of different ages in Great Lakes tributaries. Additional applications of data were...
Authors
Nicholas Sard, Seth Smith, Jared Joseph Homola, Jeannette Kanefsky, Gale A. Bravener, Jean Adams, Christopher Holbrook, Peter J. Hrodey, Kevin Tallon, Kim T. Scribner
Landscape genetics reveals unique and shared effects of urbanization for two sympatric pool-breeding amphibians
Metapopulation-structured species can be negatively affected when landscape fragmentation impairs connectivity. We investigated the effects of urbanization on genetic diversity and gene flow for two sympatric amphibian species, spotted salamanders (Ambystoma maculatum) and wood frogs (Lithobates sylvaticus), across a large (>35,000 km2) landscape in Maine, USA, containing numerous...
Authors
Jared Joseph Homola, Cyndy Loftin, Michael T. Kinnison
Replicated landscape genomics identifies evidence of local adaptation to urbanization in wood frogs
Native species that persist in urban environments may benefit from local adaptation to novel selection factors. We used double-digest restriction-side associated DNA (RAD) sequencing to evaluate shifts in genome-wide genetic diversity and investigate the presence of parallel evolution associated with urban-specific selection factors in wood frogs (Lithobates sylvaticus). Our replicated...
Authors
Cyndy Loftin, Jared Joseph Homola, Kristina M. Cammen, Caren C. Helbing, Inanc Birol, Thomas F. Schultz, Michael T. Kinnison
Science and Products
Optimization of wetland environmental DNA metabarcoding protocols for Great Lakes region herpetofauna
Many species of reptiles and amphibians (herpetofauna) rely on wetlands that are being degraded and lost at a high rate. Characterization of herpetofauna diversity in different wetland types may help guide conservation strategies. However, traditional survey methods often involve sampling within small temporal windows, and the gear deployed may be taxonomically biased, thus, they may...
Authors
Olivia M. Ruppert, Jared Joseph Homola, Jeannette Kanefsky, Alyssa Swinehart, Kim T. Scribner, John A. Robinson
Genomic data characterize reproductive ecology patterns in Michigan invasive Red Swamp Crayfish (Procambarus clarkii)
The establishment and spread of invasive species are directly related to intersexual interactions as dispersal and reproductive success are related to distribution, effective population size, and population growth. Accordingly, populations established by r-selected species are particularly difficult to suppress or eradicate. One such species, the red swamp crayfish (Procambarus clarkii)...
Authors
Nicole E. Adams, Jared Joseph Homola, Nicholas Sard, Lucas R. Nathan, Brian M. Roth, John A. Robinson, Kim T. Scribner
Demographic patterns of walleye (Sander vitreus) reproductive success in a Wisconsin population
Harvest in walleye Sander vitreus fisheries is size-selective and could influence phenotypic traits of spawners; however, contributions of individual spawners to recruitment are unknown. We used parentage analyses using single nucleotide polymorphisms to test whether parental traits were related to the probability of offspring survival in Escanaba Lake, Wisconsin. From 2017 to 2020, 1339...
Authors
Robert W. Davis, Levi M. Simmons, Stephanie L. Shaw, Greg. G Sass, Nicholas Sard, Daniel A. Isermann, Wesley Larson, Jared Joseph Homola
An amplicon genotyping panel suitable for species identification and population genetics in sauger (Sander canadensis) and walleye (Sander vitreus)
Sauger (Sander canadensis) and walleye (Sander vitreus) are closely related North American fish species that are often managed by fishery agencies throughout their ranges. However, genotyping resources for sauger are presently limited to a small set of microsatellite loci. We evaluated whether primers in an existing walleye genotyping-in-thousands panel could amplify single nucleotide...
Authors
Jared Joseph Homola, Wesley Larson, Paul Albosta
High-density genomic data reveal fine-scale population structure and pronounced islands of adaptive divergence in lake whitefish (Coregonus clupeaformis) from Lake Michigan
Understanding patterns of genetic structure and adaptive variation in natural populations is crucial for informing conservation and management. Past genetic research using 11 microsatellite loci identified six genetic stocks of lake whitefish (Coregonus clupeaformis) within Lake Michigan, USA. However, ambiguity in genetic stock assignments suggested those neutral microsatellite markers...
Authors
Yue Shi, Jared Joseph Homola, Peter T. Euclide, Daniel A. Isermann, David C. Caroffino, Megan V. McPhee
Resist-accept-direct (RAD) considerations for climate change adaptation in fisheries: The Wisconsin experience
Decision-makers in inland fisheries management must balance ecologically and socially palatable objectives for ecosystem services within financial or physical constraints. Climate change has transformed the potential range of ecosystem services available. The Resist-Accept-Direct (RAD) framework offers a foundation for responding to climate-induced ecosystem modification; however...
Authors
Zachary S. Feiner, Aaron D. Shultz, Greg. G Sass, Ashley Trudeau, Matthew G. Mitro, Colin J. Dassow, Alexander W. Latzka, Daniel A. Isermann, Bryan M. Maitland, Jared Joseph Homola, Holly Susan Embke, Michael Preul
Coalescent methods reconstruct contributions of natural colonization and stocking to origins of Michigan inland Cisco (Coregonus artedi)
Fish population structure in previously glaciated regions is often influenced by natural colonization processes and human-mediated dispersal, including fish stocking. Endemic populations are of conservation interest because they may contain rare and unique genetic variation. While coregonines are native to certain Michigan inland lakes, some were stocked with fish from Great Lakes...
Authors
Jared Joseph Homola, John A. Robinson, Jeannette Kanefsky, Wendylee Stott, Gary Whelan, Kim T. Scribner
RAPTURE (RAD capture) panel facilitates analyses characterizing sea lamprey reproductive ecology and movement dynamics
Genomic tools are lacking for invasive and native populations of sea lamprey (Petromyzon marinus). Our objective was to discover single nucleotide polymorphism (SNP) loci to conduct pedigree analyses to quantify reproductive contributions of adult sea lampreys and dispersion of sibling larval sea lampreys of different ages in Great Lakes tributaries. Additional applications of data were...
Authors
Nicholas Sard, Seth Smith, Jared Joseph Homola, Jeannette Kanefsky, Gale A. Bravener, Jean Adams, Christopher Holbrook, Peter J. Hrodey, Kevin Tallon, Kim T. Scribner
Landscape genetics reveals unique and shared effects of urbanization for two sympatric pool-breeding amphibians
Metapopulation-structured species can be negatively affected when landscape fragmentation impairs connectivity. We investigated the effects of urbanization on genetic diversity and gene flow for two sympatric amphibian species, spotted salamanders (Ambystoma maculatum) and wood frogs (Lithobates sylvaticus), across a large (>35,000 km2) landscape in Maine, USA, containing numerous...
Authors
Jared Joseph Homola, Cyndy Loftin, Michael T. Kinnison
Replicated landscape genomics identifies evidence of local adaptation to urbanization in wood frogs
Native species that persist in urban environments may benefit from local adaptation to novel selection factors. We used double-digest restriction-side associated DNA (RAD) sequencing to evaluate shifts in genome-wide genetic diversity and investigate the presence of parallel evolution associated with urban-specific selection factors in wood frogs (Lithobates sylvaticus). Our replicated...
Authors
Cyndy Loftin, Jared Joseph Homola, Kristina M. Cammen, Caren C. Helbing, Inanc Birol, Thomas F. Schultz, Michael T. Kinnison