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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41792

Genes in space: What Mojave desert tortoise genetics can tell us about landscape connectivity

Habitat loss and fragmentation in the Mojave Desert have been increasing, which can create barriers to movement and gene flow leading to decreased populations of native species. Disturbance and degradation of Mojave desert tortoise habitat includes linear features (e.g. highways, railways, and a network of dirt roads), urbanized areas, and their associated infrastructure, mining activities, energy
Authors
Kirsten E. Dutcher, Amy G. Vandergast, Todd C. Esque, Anna Mitelberg, Marjorie D Matocq, Jill S. Heaton, Ken E Nussear

A random forest approach for bounded outcome variables

Random forests have become an established tool for classication and regres- sion, in particular in high-dimensional settings and in the presence of non-additive predictor-response relationships. For bounded outcome variables restricted to the unit interval, however, classical modeling approaches based on mean squared error loss may severely suer as they do not account for heteroscedasticity in the
Authors
Leonie Weinhold, Matthias Schmid, Richard M. Mitchell, Kelly O. Maloney, Marvin N. Wright, Moritz Berger

A spatially explicit, empirical estimate of tree-based biological nitrogen fixation in forests of the United States

Quantifying human impacts on the nitrogen (N) cycle and investigating natural ecosystem N cycling depend on the magnitude of inputs from natural biological nitrogen fixation (BNF). Here, we present two bottom‐up approaches to quantify tree‐based symbiotic BNF based on forest inventory data across the coterminous United States and SE Alaska. For all major N‐fixing tree genera, we quantify BNF input
Authors
Anika Staccone, Wenying Liao, Steven Perakis, Jana Compton, Christopher L. Clark, Duncan Menge

Sensitivity of warm water fishes and rainbow trout to selected contaminants

Guidelines for developing water quality standards allow U.S. states to exclude toxicity data for the family Salmonidae (trout and salmon) when deriving guidelines for warm-water habitats. This practice reflects the belief that standards based on salmonid data may be overprotective of toxic effects on other fish taxa. In acute tests with six chemicals and eight fish species, the salmonid, Rainbow T
Authors
John M. Besser, Rebecca A. Dorman, Chris D. Ivey, Danielle M. Cleveland, Jeffery Steevens

Flea sharing among sympatric rodent hosts: implications for potential plague effects on a threatened sciurid

For vector-borne diseases, the abundance and competency of different vector species and their host preferences will impact the transfer of pathogens among hosts. Sylvatic plague is a lethal disease caused by the primarily flea-borne bacterium Yersinia pestis. Sylvatic plague was introduced into the western United States in the early 1900s and impacts many species of rodents. Plague may be suppress
Authors
Amanda R. Goldberg, Courtney J. Conway, Dean E. Biggins

Co-occurrence and occupancy dynamics of mourning doves and Eurasian collared-doves

Understanding how land cover and potential competition with invasive species shape patterns of occupancy, extirpation, and colonization of native species across a landscape can help target management for declining native populations. Mourning dove (Zenaida macroura) populations have declined throughout the United States from 1965–2015. The expansion of the Eurasian collared‐dove (Streptopelia deca
Authors
Adam W. Green, Helen Sofaer, David L Otis, Nicholas J Van Lanen

Cryptic and extensive hybridization between ancient lineages of American crows

Most species and therefore most hybrid zones have historically been defined using phenotypic characters. However, both speciation and hybridization can occur with negligible morphological differentiation. Recently developed genomic tools provide the means to better understand cryptic speciation and hybridization. The Northwestern Crow (Corvus caurinus) and American Crow (Corvus brachyrhynchos) are
Authors
David Slager, Kevin Epperly, Renee Ha, Sievert Rohwer, Christopher W. Woodall, Caroline R. Van Hemert, John Klicka

"Modified Unified Method" of carp capture

Populations of Hypophthalmichthys molitrix (silver carp) and Hypophthalmichthys nobilis (bighead carp), (together referred to herein as “bigheaded carp”) have increased exponentially in the greater Mississippi River Basin. Detrimental effects on native fish and economically important fisheries have occurred where these invasive, filter-feeding fish are abundant. The Unified Method, a harvest techn
Authors
Duane Chapman

The influence of pre-fire growth patterns on post-fire tree mortality for common conifers in western U.S. parks

Fire severity in forests is often defined in terms of post-fire tree mortality, yet the influences on tree mortality following fire are not fully understood. For trees that are not killed immediately by severe fire injury, pre-fire growth may partially predict post-fire mortality probabilities for conifers of the western U.S. Here, we consider the influence of multiple growth patterns on post-fire
Authors
Phillip van Mantgem, Donald A. Falk, Emma C. Williams, Adrian J. Das, Nathan L. Stephenson

A weight-of-evidence approach for defining thermal sensitivity in a federally endangered species

1. Managing for threatened and endangered species under changing environmental conditions is a challenge faced by resource managers worldwide. Lack of basic knowledge of the biology and habitat requirements of these species can contribute to this difficulty, but is confounded by the limitations of working with rare (i.e. few individuals) species or unrefined methods for evaluating stress. 2. A wei
Authors
Heather Galbraith, Carrie J. Blakeslee, Daniel E. Spooner, William A. Lellis

Discrimination of biological scatterers in polarimetric weather radar data: Opportunities and challenges

For radar aeroecology studies, the identification of the type of scatterer is critically important. Here, we used a random forest (RF) algorithm to develop a variety of scatterer classification models based on the backscatter values in radar resolution volumes of six radar variables (reflectivity, radial velocity, spectrum width, differential reflectivity, correlation coefficient, and differential
Authors
Sidney Gauthreaux, Robert H. Diehl

Modeling pathogen dispersal in marine fish and shellfish

Bio-physical models are a useful tool for understanding dispersal and transmission of marine pathogens. While utilized for larval dispersal models, they are only recently being used in epidemiological studies and are currently underutilized by the marine epidemiology field. Bio-physical models are useful for spatial planning and coastal management. For example, they have been used for spatial pla
Authors
Danielle L Cantrell, Maya L. Groner, Tal Ben-Horin, Jon Grant, Crawford W. Revie
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