Publications

Fish monitoring gears rarely capture all available fish, an inherent bias in monitoring programs referred to as catchability. Catchability is a source of bias that can be affected by numerous aspects of gear deployment (e.g., deployment speed, mesh size, and avoidance behavior). Thus, care must be taken when multiple surveys—especially those using different sampling methods—are combined to answer

This report presents an assessment of chlorophyll collection methods and anonymous results of field and laboratory comparisons in 2018 - 2019 by agencies in the San Francisco Estuary (SFE). The methods assessment and comparison exercises, with funding provided by the Delta Regional Monitoring Program and Bay Nutrient Management Strategy and in-kind contributions from participating agencies, are a

USACE partnered with the United States Department of Agriculture, Agricultural Research Service, United States Geological Survey, and Texas A&M University to evaluate the erodibility of the river banks and levees to inform probabilistic numerical simulations using the Bank Stability and Toe Erosion Model (BSTEM). This paper, the second of two parts, addresses processing the collected data to infor

USACE partnered with the United States Department of Agriculture, Agricultural Research Service, United States Geological Survey, and Texas A&M University to evaluate the erodibility of the river banks and levees to inform probabilistic numerical simulations using the Bank Stability and Toe Erosion Model (BSTEM). This paper discusses the measurement of the intrinsic erosion and geotechnical proper

Groundwater-flow models depend on hydraulic head and flux observations for evaluation and calibration. A different type of observation—change in storage measured using repeat microgravity—can also be used for parameter estimation by simulating the expected change in gravity from a groundwater model and including the observation misfit in the objective function. The method is demonstrated using new

Estuarine food webs are complex, as marine, freshwater, and terrestrial inputs combine and contribute variable amounts of organic material. Seasonal fluctuations in precipitation amplify the dynamism inherent to estuarine food webs, particularly in lagoonal estuaries, which can be seasonally closed and disconnected from the ocean in low-runoff periods (bar-built lagoons). Despite their abundance a

Ensemble-based data assimilation (DA) methods have displayed strong potential to improve model state and parameter estimation across several disciplines due to their computational efficiency, scalability, and ability to estimate uncertainty in the dynamic states and the parameters. However, a barrier to adoption of ensemble DA methods remains. Namely, there is currently a lack of available tools t

Neonicotinoids (NEO) represent the main class of insecticides currently in use, with thiamethoxam (THX) and clothianidin (CLO) primarily applied agriculturally. With few comprehensive studies having been performed with non-target amphibians, the aim was to investigate potential biomarker responses along an adverse outcome pathway of NEO exposure, whereby data were collected on multiple biological

We present a geostatistics-based stochastic salinity estimation framework for the Montebello Oil Field that capitalizes on available total dissolved solids (TDS) data from groundwater samples as well as electrical resistivity (ER) data from borehole logging. Data from TDS samples (n = 4924) was coded into an indicator framework based on falling below four selected thresholds (500, 1000, 3000, and

Hydrodynamics control the movement of water and material within and among habitats, where time-scales of mixing can exert bottom-up regulatory effects on aquatic ecosystems through their influence on primary production. The San Francisco Estuary (estuary) is a low-productivity ecosystem, which is in part responsible for constraining higher trophic levels, including fishes. Many research and habita

Contaminants are ubiquitous in the environment, often reaching aquatic systems. Combinations of forestry use pesticides have been detected in both water and aquatic organism tissue samples in coastal systems. Yet, most toxicological studies focus on the effects of these pesticides individually, at high doses, and over acute time periods, which, while key for establishing toxicity and safe limits,

Understanding the age and movement of groundwater is important for predicting the vulnerability of wells to contamination, constraining flow models that inform sustainable groundwater management, and interpreting geochemical signals that reflect past climate. Due to both the ubiquity of groundwater with order ten-thousand-year residence times and its importance for climate reconstruction of the la