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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 3984

Hibernation behavior of a federally-threatened ground squirrel: Climate change and habitat selection implications

Hibernation is an adaptation to survive periods of stress, from food limitation or harsh thermal conditions. A key question in contemporary ecology is whether rare, range-restricted species can change their behavior in response to climate change (i.e., through behavioral plasticity). The northern Idaho ground squirrel, Urocitellus brunneus (A. H. Howell, 1928), is a federally threatened species th
Authors
Amanda R. Goldberg, Courtney J. Conway

Gonad size measured by ultrasound to assign stage of maturity in Burbot

We measured gonad size (diameter and circumference) by ultrasound and used it as a metric to assign stage of maturity in Burbot Lota lota from Lake Roosevelt, Washington. We collected paired gonad tissue and ultrasound measurements monthly from November 2017 to March 2018 and processed gonad tissue for histological analysis to confirm stage of maturity. We measured gonad diameter and circumference
Authors
Lauren M. McGarvey, Jason E. Ilgen, Molly A. H. Webb, Christopher S. Guy, Jason G. McLellan

Evidence for the use of mucus swabs to detect Renibacterium salmoninarum in brook trout

Efforts to advance fish health diagnostics have been highlighted in many studies to improve the detection of pathogens in aquaculture facilities and wild fish populations. Typically, the detection of a pathogen has required sacrificing fish; however, many hatcheries have valuable and sometimes irreplaceable broodstocks, and lethal sampling is undesirable. Therefore, the development of non-lethal d
Authors
Tawni B. Riepe, Victoria Vincent, Vicki Milano, Eric R. Fetherman, Dana L. Winkelman

Acoustic tag retention and tagging mortality of juvenile cisco Coregonus artedi

Release of hatchery-reared juvenile cisco (Coregonus artedi) is an important tool for recovering Great Lakes populations, but post-release survival is unknown. Telemetry using small acoustic tags provides opportunities to assess the efficacy of hatchery-reared fish releases. However, better understanding of the tolerance of juvenile cisco to acoustic tags is needed. Juvenile cisco mortality and ta
Authors
James E. McKenna, Suresh Sethi, Grant Marvin Scholten, Jeremy W. Kraus, Marc Chalupnicki

The American Kestrel (Falco sparverius) genoscape: Implications for monitoring, management, and subspecies boundaries

Identifying population genetic structure is useful for inferring evolutionary process and comparing the resulting structure with subspecies boundaries can aid in species management. The American Kestrel (Falco sparverius) is a widespread and highly diverse species with 17 total subspecies, only 2 of which are found north of U.S./Mexico border (F. s. paulus is restricted to southeastern United Stat
Authors
K. C. Ruegg, M. Brinkmeyer, C. M. Bossu, R. Bay, E. C. Anderson, Clint W. Boal, R. D. Dawson, A. Eschenbauch, C. J. W. McClure, K. E. Miller, L. Morrow, J. R. Morrow, M. D. Oleyar, B. Ralph, S. Schulwitz, T. Swem, J. F. Therrien, Rich Van Buskirk, T. B. Smith, J. A. Heath

Dynamic Energy Budget modelling to predict eastern oyster growth, reproduction, and mortality under river management and climate change scenarios

Eastern oysters growing in deltaic Louisiana estuaries in the northern Gulf of Mexico must tolerate considerable salinity variation from natural climate variability (e.g., rainfall and stream run-off pushing isohalines offshore; tropical storms pushing isohalines inshore) and man-made diversions and siphons releasing freshwater from the Mississippi River. These salinity variations are predicted to
Authors
Romain Lavaud, Megan La Peyre, Justic Dubravko, Jerome F. La Peyre

Climate change may cause shifts in growth and instantaneous natural mortality of American Shad throughout their native range

American Shad Alosa sapidissima is an anadromous species with populations ranging along the U.S. Atlantic coast. Past American Shad stock assessments have been data limited and estimating system-specific growth parameters or instantaneous natural mortality (M) was not possible. This precluded system-specific stock assessment and management due to reliance on these parameters for estimating other p
Authors
Erin K. Gilligan, Daniel S. Stich, Katherine E. Mills, Michael M. Bailey, Joseph D. Zydlewski

PumaPlex100: An expanded tool for puma SNP genotyping with low-yield DNA

The original PumaPlex is a high-throughput assay developed to genotype 25 single nucleotide polymorphisms (SNPs) in pumas (Puma concolor). Here, we describe the development of PumaPlex100 – an expanded version of the original assay that now genotypes > 100 SNPs. We tested 142 candidate SNPs and developed a panel of 101 polymorphic loci, which are spread across four multiplexes and suitable for gen
Authors
John A. Erwin, Robert R. Fitak, Melanie Culver

Embracing ensemble species distribution models to inform at-risk species status assessments

Conservation planning depends on reliable information regarding the geographic distribution of species. However, our knowledge of species' distributions is often incomplete, especially when species are cryptic, difficult to survey, or rare. The use of species distribution models has increased in recent years and proven a valuable tool to evaluate habitat suitability for species. However, practitio
Authors
C. Ramirez-Reyes, M. Nazeri, Garrett Street, D. T. Jones-Ferrand, Francisco Vilella, K. O. Evans

Evidence of successful river spawning by lake trout (Salvelinus namaycush) in the lower Niagara River, Lake Ontario

Restoration of a wild-produced lake trout Salvelinus namaycush population in Lake Ontario has not been successful despite the adult population often meeting or exceeding restoration targets. Lack of high-quality spawning habitat in Lake Ontario is suggested as one impediment to recruitment of wild lake trout, although the quantity and location of spawning habitat is poorly understood. If high-qual
Authors
Alexander Gatch, Dimitry Gorsky, Zy Biesinger, Eric Bruestle, Kelley Lee, Curt Karboski, Meredith L. Bartron, Tyler Wagner

Investigating the morphological and genetic divergence of arctic char (Salvelinus alpinus) populations in lakes of arctic Alaska

Polymorphism facilitates coexistence of divergent morphs (e.g., phenotypes) of the same species by minimizing intraspecific competition, especially when resources are limiting. Arctic char (Salvelinus sp.) are a Holarctic fish often forming morphologically, and sometimes genetically, divergent morphs. In this study, we assessed the morphological and genetic diversity and divergence of 263 individu
Authors
Stephen L. Klobucar, Jessica A. Rick, Elizabeth G. Mandeville, Catherine E. Wagner, Phaedra E. Budy

Demography and loss of genetic diversity in two insular populations of the bobcat (Lynx rufus)

Among felids worldwide, only 6 of 38 species have stable or increasing populations, and most felid species are threatened by anthropogenic influences, especially habitat loss and fragmentation. We documented changes in genetic diversity in an isolated, reintroduced population of bobcats on Cumberland Island (CUIS), Georgia, USA, compared to another bobcat population on Kiawah Island, South Carolin
Authors
Cassandra M. Miller-Butterworth, Duane R. Diefenbach, Jessie E. Edson, Leslie A. Hansen, James D. Jordan, Tess M. Gingery, Amy L. Russell