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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 3984

Vertical transmission of Renibacterium salmoninarum in cutthroat trout (Oncorhynchus clarkii)

Vertical transmission of Renibacterium salmoninarum has been well-documented in anadromous salmonids but not in hatchery-reared inland trout. We assessed whether the bacterium is vertically transmitted in cutthroat trout (Oncorhynchus clarkii) from a Colorado, USA hatchery, and assessed the rate of transmission from male and female brood fish. Adult brood fish were killed, tested for R. salmoninar
Authors
Tawni B. Riepe, Eric R. Fetherman, Brad Neuschwanger, Tracy Davis, Andrew Perkins, Dana L. Winkelman

Vertical transmission of Renibacterium salmoninarum in cutthroat trout (Oncorhynchus clarkii)

Vertical transmission of Renibacterium salmoninarum has been well-documented in anadromous salmonids but not in hatchery-reared inland trout. We assessed whether the bacterium is vertically transmitted in cutthroat trout (Oncorhynchus clarkii) from a Colorado, USA hatchery, and assessed the rate of transmission from male and female brood fish. Adult brood fish were killed, tested for R. salmoninar
Authors
Tawni B. Riepe, Eric R. Fetherman, Brad Neuschwanger, Tracy Davis, Andrew Perkins, Dana L. Winkelman

Natal contributions of Kokanee salmon to Flaming Gorge Reservoir, Wyoming–Utah: An evaluation using otolith microchemistry

In a system that uses supplemental stocking to enhance a fishery that serves a dual purpose, an understanding of the contributions from natural and hatchery-produced fish is important so that hatchery resources can be appropriately allocated. Kokanee Oncorhynchus nerka were first stocked in Flaming Gorge Reservoir (FGR), Wyoming–Utah, in 1963 and serve a dual purpose as a prey resource and sport f
Authors
Aaron Black, John D. Walrath, Marte Willmes, Michael Quist

Gene flow influences the genomic architecture of local adaptation in six riverine fish species

Understanding how gene flow influences adaptive divergence is important for predicting adaptive responses. Theoretical studies suggest that when gene flow is high, clustering of adaptive genes in fewer genomic regions would protect adaptive alleles from recombination and thus be selected for, but few studies have tested it with empirical data. Here, we used restriction site-associated sequencing t
Authors
Yue Shi, Kristen L. Bouska, Garrett J. McKinney, William Dokai, Andrew Bartels, Megan V. McPhee, Wesley Larson

Relative-condition parameters for fishes of Montana, USA

Body condition indices are commonly used in the management of fish populations and are a surrogate to physiological attributes such as tissue-energy reserves. Relative condition factor (Kn) describes the condition of species relative to populations in a geographic area. We developed models to allow for the calculation of Kn in Montana, USA by using the weight–length data collected by Montana Fish,
Authors
Robert W. Eckelbecker, Nathaniel M. Heili, Christopher S. Guy, David A. Schmetterling

Environmental drivers of demography and potential factors limiting the recovery of an endangered marine top predator

Understanding what drives changes in wildlife demography is fundamental to the conservation and management of depleted or declining populations, though making inference about the intrinsic and extrinsic factors that influence survival and reproduction remains challenging. Here we use mark–resight data from 2000 to 2018 to examine the effects of environmental variability on age-specific survival an
Authors
Amanda J. Warlick, Devin S. Johnson, Tom S. Gelatt, Sarah J. Converse

Hidden in plain sight: Integrated population models to resolve partially observable latent population structure

Population models often require detailed information on sex-, age-, or size-specific abundances, but population monitoring programs cannot always acquire data at the desired resolution. Thus, state uncertainty in monitoring data can potentially limit the demographic resolution of management decisions, which may be particularly problematic for stage- or size-structured species subject to consumptiv
Authors
Abigail Jean Lawson, Patrick Jodice, Thomas R. Rainwater, Kylee Denise Dunham, Morgan Hart, Joseph W. Butfiloski, Philip M. Wilkinson, Clinton Moore

Comparing translocated beavers used as passive restoration tools to resident beavers in degraded desert rivers

Wildlife translocation facilitates conservation efforts, including recovering imperiled species, reducing human–wildlife conflict, and restoring degraded ecosystems. Beaver (American, Castor canadensis; Eurasian, C. fiber) translocation may mitigate human–wildlife conflict and facilitate ecosystem restoration. However, few projects measure outcomes of translocations by monitoring beaver postreleas
Authors
E. Doden, Phaedra E. Budy, M. Conner, J. K. Young

Ungulate migrations of the western United States, volume 3

Ungulates (hooved mammals) have a broad distribution across the western United States and play an important role in maintaining predator-prey dynamics, affecting vegetation communities, and providing economic benefits to regional communities through tourism and hunting. Throughout the diverse landscapes they occupy, many ungulate populations undertake seasonal migrations to exploit spatially and t
Authors
Matthew Kauffman, Blake Lowrey, Jodi Berg, Scott Bergen, Doug Brimeyer, Patrick Burke, Teal Cufaude, James W. Cain, Jeffrey Cole, Alyson Courtemanch, Michelle Cowardin, Julie Cunningham, Melia DeVivo, Jennifer Diamond, Orrin Duvuvuei, Julien Fattebert, Joanna R. Ennis, Darby Finley, Jessica Fort, Gary Fralick, Eric Freeman, Jeff Gagnon, Julie Garcia, Emily Gelzer, Morgan Graham, Jacob Gray, Evan Greenspan, L. Embere Hall, Curtis Hendricks, Andy Holland, Brian Holmes, Katey Huggler, Mark A. Hurley, Emily Jeffreys, Aran Johnson, Lee Knox, Kevin Krasnow, Zack Lockyer, Hannah Manninen, Mike McDonald, Jennifer L. McKee, James Meacham, Jerod Merkle, Barb Moore, Tony W. Mong, Clayton Nielsen, Brendan Oates, Kim Olsen, Daniel Olson, Lucas Olson, Matt Pieron, Jake Powell, Annemarie Prince, Kelly Proffitt, Craig Reddell, Corinna Riginos, Robert Ritson, Sierra Robatcek, Shane Roberts, Hall Sawyer, Cody Schroeder, Jessie Shapiro, Nova Simpson, Scott Sprague, Alethea Steingisser, Nicole Tatman, Benjamin Turnock, Cody F. Wallace, Laura Wolf

Causes, responses, and implications of anthropogenic versus natural flow intermittence in river networks

Rivers that do not flow year-round are the predominant type of running waters on Earth. Despite a burgeoning literature on natural flow intermittence (NFI), knowledge about the hydrological causes and ecological effects of human-induced, anthropogenic flow intermittence (AFI) remains limited. NFI and AFI could generate contrasting hydrological and biological responses in rivers because of distinct
Authors
Thibault Datry, Amélie Truchy, Julian D. Olden, Michelle H. Busch, Rachel Stubbington, Walter K. Dodds, Sam Zipper, Songyan Yu, Mathis L. Messager, Jonathan D. Tonkin, Kendra E. Kaiser, John C. Hammond, E.K. Moody, Ryan Burrows, Romain Sarremejane, Amanda DelVecchia, Megan L. Fork, Chelsea Little, Richard H Walker, Annika W. Walters, Daniel Allen

Landscape characteristics influence projected growth rates of stream-resident juvenile salmon in the face of climate change in the Kenai River watershed, south-central Alaska

ObjectiveClimate change is affecting the distribution and productivity of Pacific salmon throughout their range. At high latitudes, warmer temperatures have been associated with increased freshwater growth of juvenile salmon, but it is not clear how long this trend will continue before further warming leads to reduced growth. To explore the potential influence of climate warming on juvenile Chinoo
Authors
B. E. Meyer, M. S. Wipfli, E. R. Schoen, D. J. Rinella, Jeffrey A. Falke

Nonlethal tools to identify mass ovarian follicular atresia in Burbot

Skipped spawning, or variation in spawning periodicity, occurs in many annual spawning fish species and is an important consideration for population management. We assessed plasma sex steroid concentrations and measured gonad size and ovarian follicle diameter as metrics to nonlethally identify mass ovarian follicular atresia, which may contribute to skipped spawning in Burbot Lota lota. We mainta
Authors
Lauren M. McGarvey, Jason E. Ilgen, Christopher S. Guy, Jason G. McLellan, Molly A. H. Webb