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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 3984

Dynamic optimization of landscape connectivity embedding spatial-capture-recapture information

Maintaining landscape connectivity is increasingly important in wildlife conservation, especially for species experiencing the effects of habitat loss and fragmentation. We propose a novel approach to dynamically optimize landscape connectivity. Our approach is based on a mixed integer program formulation, embedding a spatial capture-recapture model that estimates the density, space usage, and lan
Authors
Yexiang Xue, Xiaojian Wu, Dana J. Morin, Bistra Dilkina, Angela K. Fuller, J. Andrew Royle, Carla P. Gomes

Defining a Safe Operating Space for inland recreational fisheries

The Safe Operating Space (SOS) of a recreational fishery is the multidimensional region defined by levels of harvest, angler effort, habitat, predation and other factors in which the fishery is sustainable into the future. SOS boundaries exhibit trade-offs such that decreases in harvest can compensate to some degree for losses of habitat, increases in predation and increasing value of fishing time
Authors
Stephen R. Carpenter, William A. Brock, Gretchen J. A. Hansen, Jonathan F. Hansen, Joseph M. Hennessy, Daniel A. Isermann, Eric J. Pedersen, K. Martin Perales, Andrew L. Rypel, Greg G. Sass, Tyler D. Tunney, M. Jake Vander Zanden

Refined conservation strategies for Golden-winged Warblers in the West Virginia highlands with implications for the broader avian community

Golden-winged Warbler (Vermivora chrysoptera) populations in the Appalachian Mountains region of North America are imperiled, warranting species-specific conservation. However, management for Golden-winged Warblers can affect both early-successional and forest species, many of which are also declining in the region. We conducted point counts in sites representing a range of successional stages wit
Authors
Kyle R. Aldinger, Petra B. Wood, Catherine M. Johnson

Environmental niche models for riverine desert fishes and their similarity according to phylogeny and functionality

Environmental filtering and competitive exclusion are hypotheses frequently invoked in explaining species' environmental niches (i.e., geographic distributions). A key assumption in both hypotheses is that the functional niche (i.e., species traits) governs the environmental niche, but few studies have rigorously evaluated this assumption. Furthermore, phylogeny could be associated with these hypo
Authors
James E. Whitney, Joanna B. Whittier, Craig P. Paukert

Tools to minimize interlaboratory variability in vitellogenin gene expression monitoring programs

The egg yolk precursor protein vitellogenin is widely used as a biomarker of estrogen exposure in male fish. However, standardized methodology is lacking and little is known regarding the reproducibility of results among laboratories using different equipment, reagents, protocols, and data analysis programs. To address this data gap we tested the reproducibility across laboratories to evaluate vit
Authors
Aaron Jastrow, Denise A. Gordon, Kasie M. Auger, Elizabeth C. Punska, Kathleen F. Arcaro, Kristen Keteles, Dana L. Winkelman, David Lattier, Adam Biales, James M. Lazorchak

Top-down and bottom-up interactions influence fledging success at North America’s largest colony of Caspian terns (Hydroprogne caspia)

Our study investigated the influence of bottom-up and top-down drivers on the declining fledging success at a once thriving breeding colony of Caspian terns (Hydroprogne caspia). Situated at the mouth of the Columbia River, OR, East Sand Island (ESI) is home to the largest Caspian tern breeding colony in North America. Since 2001, the decline in fledging success of Caspian terns at ESI has been as
Authors
Stefanie Collar, Daniel D. Roby, Donald E. Lyons

Survival, movement, and distribution of juvenile Burbot in a tributary of the Kootenai River

Burbot Lota lota in the lower Kootenai River, Idaho, have been the focus of extensive conservation efforts, particularly the release of hatchery-reared juvenile Burbot into small tributaries. The Idaho Department of Fish and Game installed a fixed PIT antenna on Deep Creek, a tributary of the Kootenai River, to evaluate movement of juvenile Burbot to the Kootenai River. Since then, approximately 1
Authors
Zachary S. Beard, Michael C. Quist, Ryan S. Hardy, Tyler J. Ross

Breeding biology of an endemic Bornean turdid, the Fruithunter (Chlamydochaera jefferyi), and life history comparisons with Turdus species of the world

We present the first description of the breeding biology for the Fruithunter (Chlamydochaera jefferyi), a member of the cosmopolitan family Turdidae, and a montane endemic to the tropical Asian island of Borneo. We also compile breeding biology traits from the literature to make comparisons between the Fruithunter and the thrush genus Turdus. Our comparisons indicate that Fruithunters exhibit a sl
Authors
Adam E. Mitchell, Fred Tuh, Thomas E. Martin

A model-based approach to wildland fire reconstruction using sediment charcoal records

Lake sediment charcoal records are used in paleoecological analyses to reconstruct fire history, including the identification of past wildland fires. One challenge of applying sediment charcoal records to infer fire history is the separation of charcoal associated with local fire occurrence and charcoal originating from regional fire activity. Despite a variety of methods to identify local fires f
Authors
Malcolm S. Itter, Andrew O. Finley, Mevin Hooten, Philip E. Higuera, Jennifer R. Marlon, Ryan Kelly, Jason S. McLachlan

Potential for spatial displacement of Cook Inlet beluga whales by anthropogenic noise in critical habitat

The population of beluga whales in Cook Inlet, Alaska, USA, declined by nearly half in the mid-1990s, primarily from an unsustainable harvest, and was listed as endangered in 2008. In 2014, abundance was ~340 whales, and the population trend during 1999-2014 was -1.3% yr-1. Cook Inlet beluga whales are particularly vulnerable to anthropogenic impacts, and noise that has the potential to reduce com
Authors
Robert J. Small, Brian M. Brost, Mevin Hooten, Manuel Castellote, Jeffrey Mondragon

Basis function models for animal movement

Advances in satellite-based data collection techniques have served as a catalyst for new statistical methodology to analyze these data. In wildlife ecological studies, satellite-based data and methodology have provided a wealth of information about animal space use and the investigation of individual-based animal–environment relationships. With the technology for data collection improving dramatic
Authors
Mevin Hooten, Devin S. Johnson

A comparison of two mobile electrode arrays for increasing mortality of Lake Trout embryos

Conservation of sport fisheries and populations of several native fishes in the western United States is dependent on sustained success of removal programs targeting invasive Lake Trout Salvelinus namaycush. Gill-netting of spawning adults is one strategy used to decrease spawning success; however, additional complementary methods are needed to disrupt Lake Trout reproduction where bycatch in gill
Authors
Peter J. Brown, Christopher S. Guy, Michael H. Meeuwig