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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 3984

A reply to Iversen et al.'s comment “Monitoring of animal abundance by environmental DNA - An increasingly obscure perspective”

We appreciate the conversation put forward by Iversen et al. (2015) in their response to our article “Quantification of eDNA shedding rates from invasive bighead carp Hypophthalmichthys nobilis and silver carp Hypophthalmichthys molitrix” in the 2015 environmental DNA special issue of Biological Conservation.We agree with Iversen et al.'s concern about overly optimistic conclusions that could be d
Authors
Katy E. Klymus, Cathy A. Richter, Duane Chapman, Craig P. Paukert

Sampling techniques for burbot in a western non-wadeable river

Burbot, Lota lota (L.), populations are declining throughout much of their native distribution. Although numerous aspects of burbot ecology are well understood, less is known about effective sampling techniques for burbot in lotic systems. Occupancy models were used to estimate the probability of detection () for three gears (6.4- and 19-mm bar mesh hoop nets, night electric fishing), within the c
Authors
Z. B. Klein, Michael C. Quist, D.T. Rhea, A. C. Senecal

Restoration of oyster reefs in an estuarine lake: population dynamics and shell accretion

Restoration activities inherently depend on understanding the spatial and temporal variation in basic demographic rates of the species of interest. For species that modify and maintain their own habitat such as the eastern oyster Crassostrea virginica, understanding demographic rates and their impacts on population and habitat success are crucial to ensuring restoration success. We measured oyster
Authors
Sandra M. Casas, Jerome F. La Peyre, Megan La Peyre

Effects of oyster harvest activities on Louisiana reef habitat and resident nekton communities

Oysters are often cited as “ecosystem engineers” because they modify their environment. Coastal Louisiana contains extensive oyster reef areas that have been harvested for decades, and whether differences in habitat functions exist between those areas and nonharvested reefs is unclear. We compared reef physical structure and resident community metrics between these 2 subtidal reef types. Harvested
Authors
Steve Beck, Megan K. LaPeyre

Assessment of general health of fishes collected at selected sites in the Great Lakes Basin In 2012

During the past decade, there has been a substantive increase in the detection of “emerging contaminants”, defined as a new substance, chemical, or metabolite in the environment; or a legacy substance with a newly expanded distribution, altered release, or a newly recognized effect (such as endocrine disruption). Emerging contaminants include substances such as biogenic hormones (human and animal)
Authors
Patricia M. Mazik, Ryan P. Braham, Cassidy M. Hahn, Vicki Blazer

Elevational gradient in clutch size of Red-faced Warblers

Our understanding of life history evolution has benefited from debates regarding the underlying causes, and geographic ubiquity, of spatial patterns in avian clutch sizes. Past studies have revealed that birds lay smaller clutch sizes at higher elevation. However, in most previous studies, investigators have failed to adequately control for elevational differences in breeding phenology. To better
Authors
Kristen G. Dillon, Courtney J. Conway

Looking beyond rare species as umbrella species: Northern Bobwhites (Colinus virginianus) and conservation of grassland and shrubland birds

Changes in land use and land cover throughout the eastern half of North America have caused substantial declines in populations of birds that rely on grassland and shrubland vegetation types, including socially and economically important game birds such as the Northern Bobwhite (Colinus virginianus; hereafter bobwhites). As much attention is focused on habitat management and restoration for bobwhi
Authors
Andrew D. Crosby, R.D. Elmore, David M. Leslie, Rodney E. Will

Avian malaria in Hawaiian forest birds: Infection and population impacts across species and elevations

Wildlife diseases can present significant threats to ecological systems and biological diversity, as well as domestic animal and human health. However, determining the dynamics of wildlife diseases and understanding the impact on host populations is a significant challenge. In Hawai‘i, there is ample circumstantial evidence that introduced avian malaria (Plasmodium relictum) has played an importan
Authors
Michael D. Samuel, Bethany L. Woodworth, Carter T. Atkinson, P. J. Hart, Dennis LaPointe

A formalized approach to making effective natural resource management decisions for Alaska National Parks

A fundamental goal of the National Park Service (NPS) is the long-term protection and management of resources in the National Park System. Reaching this goal requires multiple approaches, including the conservation of essential habitats and the identification and elimination of potential threats to biota and habitats. To accomplish these goals, the NPS has implemented the Alaska Region Vital Signs
Authors
Margaret C. MacCluskie, Angela Romito, James Peterson, James P. Lawler

Bird species turnover is related to changing predation risk along a vegetation gradient

Turnover in animal species along vegetation gradients is often assumed to reflect adaptive habitat preferences that are narrower than the full gradient. Specifically, animals may decline in abundance where their reproductive success is low, and these poor-quality locations differ among species. Yet habitat use does not always appear adaptive. The crucial tests of how abundances and demographic cos
Authors
Joseph A. LaManna, Amy B. Hemenway, Vanna Boccadori, Thomas E. Martin

Application of science-based restoration planning to a desert river system

Persistence of many desert river species is threatened by a suite of impacts linked to water infrastructure projects that provide human water security where water is scarce. Many desert rivers have undergone regime shifts from spatially and temporally dynamic ecosystems to more stable systems dominated by homogenous physical habitat. Restoration of desert river systems could aid in biodiversity co
Authors
Brian G. Laub, Justin Jimenez, Phaedra Budy

Recent changes in annual area burned in interior Alaska: The impact of fire management

The Alaskan boreal forest is characterized by frequent extensive wildfires whose spatial extent has been mapped for the past 70 years. Simple predictions based on this record indicate that area burned will increase as a response to climate warming in Alaska. However, two additional factors have affected the area burned in this time record: the Pacific decadal oscillation (PDO) switched from cool a
Authors
M.P. Calef, Anna Varvak, A. David McGuire, F. S. Chapin, K. B. Reinhold