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Publications

Browse publications authored by our scientists.  Publications available are: USGS-authored journal articles, series reports, book chapters, other government publications, and more. **Disclaimer: The views expressed in Non-USGS publications are those of the author and do not represent the views of the USGS, Department of the Interior, or the U.S. Government.

Filter Total Items: 3984

Spatial and temporal patterns of surface water quality and ichthyotoxicity in urban and rural river basins in Texas

The Double Mountain Fork Brazos River (Texas, USA) consists of North (NF) and South Forks (SF). The NF receives urban runoff and twice-reclaimed wastewater effluent, whereas the SF flows through primarily rural areas. The objective of this study was to determine and compare associations between standard water quality variables and ichthyotoxicity at a landscape scale that included urban (NF) and r
Authors
Matthew M. VanLandeghem, Matthew D. Meyer, Stephen B. Cox, Bibek Sharma, Reynaldo Patiño

A Bayesian spawning habitat suitability model for American shad in southeastern United States rivers

Habitat suitability index models for American shad Alosa sapidissima were developed by Stier and Crance in 1985. These models, which were based on a combination of published information and expert opinion, are often used to make decisions about hydropower dam operations and fish passage. The purpose of this study was to develop updated habitat suitability index models for spawning American shad in
Authors
Joseph E. Hightower, Julianne E. Harris, Joshua K. Raabe, Prescott Brownell, C. Ashton Drew

Elk herbivory alters small mammal assemblages in high elevation drainages

Heavy herbivory by ungulates can substantially alter habitat, but the indirect consequences of habitat modification for animal assemblages that rely on that habitat are not well studied. This is a particularly important topic given that climate change can alter plant–herbivore interactions. We explored short-term responses of small mammal communities to recent exclusion of Rocky Mountain elk (Cer
Authors
Elliott W.R. Parsons, John L. Maron, Thomas E. Martin

Effect of survey design and catch rate estimation on total catch estimates in Chinook salmon fisheries

Roving–roving and roving–access creel surveys are the primary techniques used to obtain information on harvest of Chinook salmon Oncorhynchus tshawytscha in Idaho sport fisheries. Once interviews are conducted using roving–roving or roving–access survey designs, mean catch rate can be estimated with the ratio-of-means (ROM) estimator, the mean-of-ratios (MOR) estimator, or the MOR estimator with e
Authors
Joshua L. McCormick, Michael C. Quist, Daniel J. Schill

A comparative and experimental evaluation of performance of stocked diploid and triploid brook trout

Despite numerous negative impacts, nonnative trout are still being stocked to provide economically and socially valuable sport fisheries in western mountain lakes. We evaluated relative performance and potential differences in feeding strategy and competitive ability of triploid versus diploid brook trout Salvelinus fontinalis in alpine lakes, as well as behavioral and performance differences of d
Authors
Phaedra E. Budy, G.P. Thiede, A. Dean, D. Olsen, G. Rowley

Adaptive breeding habitat selection: Is it for the birds?

The question of why animals choose particular habitats has important implications for understanding behavioral evolution and distribution of organisms in the wild and for delineating between habitats of different quality for conservation and management. Habitats chosen by animals can influence fitness outcomes via the costs (e.g., predation risk) and benefits (e.g., food availability) of habitat u
Authors
Anna D. Chalfoun, Kenneth A. Schmidt

Modeling future conservation of Hawaiian Honeycreepers by mosquito management and translocation of disease-tolerant Amakihi

Avian malaria is an important cause of the decline of endemic Hawaiian honeycreepers. Because of the complexity of this disease system we used a computer model of avian malaria in forest birds to evaluate how two proposed conservation strategies: 1) reduction of habitat for mosquito larvae and 2) establishment of a low-elevation, malaria-tolerant honeycreeper (Hawaii Amakihi) to mid-elevation fore
Authors
Peter H. F. Hobbelen, Michael D. Samuel, Dennis Lapointe, Carter T. Atkinson

An accessible method for implementing hierarchical models with spatio-temporal abundance data

A common goal in ecology and wildlife management is to determine the causes of variation in population dynamics over long periods of time and across large spatial scales. Many assumptions must nevertheless be overcome to make appropriate inference about spatio-temporal variation in population dynamics, such as autocorrelation among data points, excess zeros, and observation error in count data. To
Authors
Beth E. Ross, Melvin B. Hooten, David N. Koons

Phase 1 freshwater mussel survey and comparison to historical surveys at the Pond Eddy bridge, Delaware River, New York and Pennsylvania

A qualitative freshwater mussel survey was conducted in a section of the main stem Delaware River near the Pond Eddy Bridge site, New York and Pennsylvania, during summer 2011 to assess population levels of state and Federal threatened and endangered species. Historical data that were collected at this site were compared to data from the 2011 survey to assess changes in mussel community compositio
Authors
Heather S. Galbraith

Importance of tributary streams for rainbow trout reproduction: insights from a small stream in Georgia and a bi-genomic approach

Tributaries of tailwater fisheries in the southeastern USA have been used for spawning by stocked rainbow trout (Oncorhynchus mykiss), but their importance may have been underestimated using traditional fish survey methods such as electrofishing and redd counts. We used a bi-genomic approach, mitochondrial DNA sequences and nuclear microsatellite loci, to estimate the number of spawning adults in
Authors
D. Lee, Justin B. Lack, Ronald A. Van Den Bussche, James M. Long

The shallow-water fish assemblage of Isla del Coco National Park, Costa Rica: Structure and patterns in an isolated, predator-dominated ecosystem

Fishes at Isla del Coco National Park, Costa Rica, were surveyed as part of a larger scientific expedition to the area in September 2009. The average total biomass of nearshore fishes was 7.8 tonnes per ha, among the largest observed in the tropics, with apex predators such as sharks, jacks, and groupers accounting for nearly 40% of the total biomass. The abundance of reef and pelagic sharks, part
Authors
Alan M. Friedlander, Brian J. Zgliczynski, Enric Ballesteros, Octavio Aburto-Oropeza, Allan Bolaños, Enric Sala

Species-specific and transgenerational responses to increasing salinity in sympatric freshwater gastropods

Freshwater salinization is a global concern partly attributable to anthropogenic salt contamination. The authors examined the effects of increased salinity (as NaCl, 250-4,000 µS/cm, specific conductance) on two sympatric freshwater gastropods (Helisoma trivolvis and Physa pomillia). Life stage sensitivities were determined by exposing naive eggs or naive juveniles (through adulthood and reproduct
Authors
Jamie G. Suski, Christopher J. Salice, Reynaldo Patiño