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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41771

Assessing year‐round habitat use by migratory sea ducks in a multi‐species context reveals seasonal variation in habitat selection and partitioning

Long‐distance migration presents complex conservation challenges, and migratory species often experience shortfalls in conservation due to the difficulty of identifying important locations and resources throughout the annual cycle. In order to prioritize habitats for conservation of migratory wildlife, it is necessary to understand how habitat needs change throughout the annual cycle, as well as t
Authors
Juliet S. Lamb, Peter WC Paton, Jason E. Osenkowski, Shannon S. Badzinski, Alicia Berlin, Timothy D. Bowman, Chris Dwyer, Luke J. Fara, Scott G. Gilliland, Kevin P. Kenow, Christine Lepage, Mark L. Mallory, Glenn H. Olsen, Matthew Perry, Scott A. Petrie, Jean-Pierre L. Savard, Lucas Savoy, Michael L. Schummer, Caleb S. Spiegel, Scott R. McWilliams

Bioclimatic modeling of potential vegetation types as an alternative to species distribution models for projecting plant species shifts under changing climates

Land managers need new tools for planning novel futures due to climate change. Species distribution modeling (SDM) has been used extensively to predict future distributions of species under different climates, but their map products are often too coarse for fine-scale operational use. In this study we developed a flexible, efficient, and robust method for mapping current and future distributions a
Authors
Robert Keane, Lisa M. Holsinger, Rachel A. Loehman

Environmental gradients of selection for an alpine-obligate bird, the white-tailed ptarmigan (Lagopus leucura)

The warming climate will expose alpine species adapted to a highly seasonal, harsh environment to novel environmental conditions. A species can shift their distribution, acclimate, or adapt in response to a new climate. Alpine species have little suitable habitat to shift their distribution, and the limits of acclimation will likely be tested by climate change in the long-term. Adaptive genetic va
Authors
Shawna J Zimmerman, Cameron L. Aldridge, Kathryn M. Langin, Gregory T Wann, Robert S. Cornman, Sara J. Oyler-McCance

Trait‐based variation in host contribution to pathogen transmission across species and resource supplies

Two key knowledge gaps currently limit the development of more predictive and general models of pathogen transmission: (1) the physiological basis of heterogeneity in host contribution to pathogen transmission (reservoir potential) remains poorly understood, and (2) a general means of integrating the ecological dynamics of host communities has yet to emerge. If the traits responsible for differenc
Authors
Miranda E Welsh, James P. Cronin, Charles E. Mitchell

A multi-state occupancy modelling framework for robust estimation of disease prevalence in multi-tissue disease systems

Given the public health, economic and conservation implications of zoonotic diseases, their effective surveillance is of paramount importance. The traditional approach to estimating pathogen prevalence as the proportion of infected individuals in the population is biased because it fails to account for imperfect detection. A statistically robust way to reduce bias in prevalence estimates is to obt
Authors
Vratika Chaudhary, Samantha M Wisely, Felipe A Hernandez, James E. Hines, James D. Nichols, Madan K. Oli

Beyond sticks and stones: Integrating physical and ecological conditions into watershed restoration assessments using a food web modeling approach

Watershed assessments have become common for prioritizing restoration in river networks. These assessments primarily focus on geomorphic conditions of rivers but less frequently incorporate non-geomorphic abiotic factors such as water chemistry and temperature, and biotic factors such as the structure of food webs. Using a dynamic food web model that integrates physical and ecological environmenta
Authors
Emily J Whitney, James R Bellmore, Joseph R. Benjamin, Chris E Jordan, Jason B. Dunham, Michael Newsom, Matt Nahorniak

What to do when invaders are out of control?

Biological invasions threaten species and ecosystems worldwide. Impacts from invasions are especially prevalent in freshwaters, where managers have struggled to contain the problem. Conventional approaches to managing invaders focus on prevention and control. In practice, these measures have proven to be variably effective. Control or eradication of established invaders is particularly difficult a
Authors
Jason B. Dunham, Ivan Arismendi, Christina Murphy, Alex Koeberle, J Andres Olivos, James B Pearson, Francisco Pickens, David Roon, John R. Stevenson

Architecture of remnant trees influences native woody plant recruitment in abandoned Hawaiian pastures

Abandoned tropical pastures offer opportunities for passive and active restoration of native forest communities. Tree architecture of remnant canopy trees may be one important factor that can facilitate native plant recruitment in abandoned pastures but has largely been overlooked. Here, we evaluated patterns of native woody plant recruitment under remnant trees in abandoned pastures on Hawai’i Is
Authors
Evan M Rehm, Stephanie G. Yelenik, Marley Puanani Smith, Carla M. D’Antonio

Slender salamanders (genus Batrachoseps) reveal Southern California to be a center for the diversification, persistence, and introduction of salamander lineages

BackgroundThe southern California biodiversity hotspot has had a complex geological history, with both plate tectonic forces and sea level changes repeatedly reconfiguring the region, and likely driving both lineage splittings and extinctions. Here we investigate patterns of genetic divergence in two species of slender salamanders (Plethodontidae: Batrachoseps) in this region. The complex geologic
Authors
Elizabeth L Jockusch, Robert W Hansen, Robert N. Fisher, David B Wake

Assessing the assumptions of classification agreement, accuracy, and predictable healing time of sea lamprey wounds on lake trout

Sea lamprey control in the Laurentian Great Lakes relies on records of sea lamprey wounds on lake trout to assess whether control efforts are supporting fisheries management targets. Wounding records have been maintained for 70 years under the assumption that they are a reliable and accurate reflection of sea lamprey damage inflicted on fish populations. However, two key assumptions underpinning t
Authors
Tyler Firkus, Cheryl Murphy, Jean V. Adams, Ted Treska, Gregory J. Fischer

Winter survival of female Ring-Necked Ducks in the Southern Atlantic Flyway

North American waterfowl harvest regulations are largely guided by the status of breeding populations. Nonetheless, understanding the demographics of wintering waterfowl populations can elucidate the effects of hunting pressure on population dynamics. The ring‐necked duck (Aythya collaris) breeds and winters in all North American administrative flyways and is one of the most abundant and most harv
Authors
Tori D. Mezebish, Glenn H. Olsen, Michele Goodman, Frank C. Rohwer, Mark D. McConnell

Capturing spatiotemporal patterns in presence-absence data to inform monitoring and sampling designs for the threatened Dakota skipper (Lepidoptera: Hesperiidae) in the Great Plains of the United States

Declines among species of insect pollinators, especially butterflies, has garnered attention from scientists and managers. Often these declines have spurred governments to declare some species as threatened or endangered. We used existing presence–absence data from surveys for the threatened Dakota skipper Hesperia dacotae (Skinner) to build statistical maps of species presence that could be used
Authors
Max Post van der Burg, Jane E. Austin, Mark T. Wiltermuth, Wesley E. Newton, Garrett J. MacDonald