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Publications

This list of publications includes peer-review journal articles, official USGS publications series, reports and more authored by scientists in the Ecosystems Mission Area. A database of all USGS publications, with advanced search features, can be accessed at the USGS Publications Warehouse.  

Filter Total Items: 41772

Looking where it’s hard to see: A case study documenting rare Eucyclogobius newberryi presence in a California lagoon

Environmental DNA (eDNA) analysis is increasingly used for biomonitoring and research of fish populations and communities by environmental resource managers and academic researchers. Although managers are much interested in expanding the use of eDNA as a survey technique, they are sceptical about both its utility (given that information is often limited to presence/absence of a species) and feasib
Authors
Terra L Dressler, Kevin D. Lafferty, Christopher L. Jerde, Tom L. Dudley

At Palmyra Atoll, the fish‐community environmental DNA signal changes across habitats but not with tides

At Palmyra Atoll, the environmental DNA (eDNA) signal on tidal sand flats was associated with fish biomass density and captured 98%–100% of the expected species diversity there. Although eDNA spilled over across habitats, species associated with reef habitat contributed more eDNA to reef sites than to sand‐flat sites, and species associated with sand‐flat habitat contributed more eDNA to sand‐flat
Authors
Kevin D. Lafferty, Ana E Garcia-Vedrenne, John P. McLaughlin, Jasmine N. Childress, Marisa F Morse, Christopher L. Jerde

Freshwater crabs (Decapoda: Pseudothelphusidae) increase rates of leaf breakdown in a neotropical headwater stream

Freshwater crabs are the largest macroconsumers in many neotropical headwater streams, but few studies have examined their roles in ecosystem processes such as leaf litter breakdown. As omnivorous macroconsumers, freshwater crabs affect multiple trophic levels. They may directly increase leaf breakdown through fragmentation and consumption or indirectly decrease breakdown by consuming other macroi
Authors
Carol Yang, Seth J. Wenger, Amanda Rugenski, Ingo S. Wehrtmann, Scott Connelly, Mary Freeman

Managing invasive plants on Great Plains grasslands: A discussion of current challenges

The Great Plains of North America encompass approximately 1,300,000 km2 of land from Texas to Saskatchewan. The integrity of these lands is under continual assault by long-established and newly-arrived invasive plant species, which can threaten native species and diminish land values and ecological goods and services by degrading desired grassland resources. The Great Plains are a mixture of priva
Authors
John F. Gaskin, Erin Espeland, Casey D. Johnson, Diane L. Larson, Jane M. Mangold, Rachel A. McGee, Chuck Milner, Shishir Paudel, Dean E. Pearson, Lora B. Perkins, Chadley W. Prosser, Justin B. Runyon, Sharlene E. Sing, Zachary A. Sylvain, Amy Symstad, Daniel R. Tekiela

Short- and long-term responses of riparian cottonwoods (Populus spp.) to flow diversion: Analysis of tree-ring radial growth and stable carbon isotopes

Long duration tree-ring records with annual precision allow for the reconstruction of past growing conditions. Investigations limited to the most common tree-ring proxy of ring width can be difficult to interpret, however, because radial growth is affected by multiple environmental processes. Furthermore, studies of living trees may miss important effects of drought on tree survival and forest cha
Authors
Derek M. Schook, Jonathan M. Friedman, Craig A. Stricker, Adam Z. Csank, David J. Cooper

Evaluation of the impacts of radio-marking devices on feral horses and burros in a captive setting

Radio-collars and other radio-marking devices have been invaluable tools for wildlife managers for >40 years. These marking devices have improved our understanding of wildlife spatial ecology and demographic parameters and provided new data facilitating model development for species conservation and management. Although these tools have been used on virtually all North American ungulates, their de
Authors
Kathryn A. Schoenecker, Sarah R. B. King, Gail C. Collins

Decision analysis for managing public natural resources

Examples like the Grand Canyon story are becoming more common—agencies and stakeholders are increasingly using decision tools to help navigate complex decisions regarding natural resources. Several books and many papers have made the case for the use of decision analysis in natural resource management settings and have described the tools available (Conroy and Peterson 2013; Gregory et al. 2012; W
Authors
Michael C. Runge, Ellen A Bean

Using remotely sensed data to map Joshua Tree distributions at Naval Air Weapons Station China Lake, California, 2018

Species distribution models (SDMs) that are derived through inference have been used to provide important insights toward species distributions. Their inferences can be robust in relation to known presences, but SDMs have error rates that cannot be quantified with certainty. For large plant species with unique signatures and in sparsely vegetated habitats, object-oriented satellite image interpret
Authors
Todd C. Esque, Patrick E. Baird, Felicia C. Chen, David C. Housman, Tom J. Holton

Morphological, elemental, and boron isotopic insights into pathophysiology of diseased coral growth anomalies

Growth anomalies (GAs) impact both coral skeleton and soft tissues and are detrimental to reef health. This tumor-like disease is increasingly found throughout the tropics and is commonly associated with high human population density, yet little is known about the etiology, pathology, or calcification behavior of the disease. Here, we investigate potential mechanisms involved in the development of
Authors
Erik Andersson, Joseph A. E. Stewart, Thierry M. Work, Cheryl M. Woodley, Tracey B. Schock, Russell D. Day

Local to landscape-level controls of water fluxes through Hawaiian forests: Effects of invasive animals and plants on soil infiltration capacity across substrate and moisture gradients

Given the potential effect of invasive plants and animals to water fluxes through forests, the invasive-driven degradation of native ecosystems is a topic of great concern for many downstream land and water managers. The infiltration rate determines the partitioning between runoff and infiltration into soil in Hawaiian forests and beyond. Thus, to explore the ecohydrological effects of plant and a
Authors
Lucas B. Fortini, Christina Leopold, Kimberlie Perkins, Oliver A. Chadwick, Stephanie G. Yelenik, James D. Jacobi, Kaiena Bishaw, Makani Gregg, Sarah N. Rosa

Joint seasonality in geographic and ecological spaces, illustrated with a partially migratory bird

As most species live in seasonal environments, considering varying conditions is essential to understand species dynamics in both geographic and ecological spaces. Both resident and migratory species need to contend with seasonality and balance settling in favorable areas with tracking favorable environmental conditions during the year. We present an exploratory framework to jointly investigate a
Authors
Mathieu Basille, James I. Watling, Stephanie Romanach, Rena R. Borkhataria

Specialized meltwater biodiversity persists despite widespread deglaciation

Glaciers are important drivers of environmental heterogeneity and biological diversity across mountain landscapes. Worldwide, glaciers are receding rapidly due to climate change, with important consequences for biodiversity in mountain ecosystems. However, the effects of glacier loss on biodiversity have never been quantified across a mountainous region, primarily due to a lack of adequate data at
Authors
Clint C. Muhlfeld, Timothy Joseph Cline, J. Joseph Giersch, Erich Peitzsch, Caitlyn Florentine, Dean Jacobsen, Scott Hotaling